entrydate=January 18, 2011
topic=caArray Usage |
Qtext=
*How can I upload and store QC data in caArray? *
We want to add the QC data of an experiment in caArray, and we do not see any field in caArray related to this. Where in caArray can we store this type of data?
Here is the type of QC data we capture for arrays: |
- Chip Lot #, Hybridization Date, Chip Status (Good, Dim, Scratch, Background, Bad-Other) - For all types of arrays
- cQC, QC call rate, - For SNP 6.0 arrays
- AUC - For Gene 1.0 ST/Exon 1.0 ST arrays
- Noise, Scale Factor, %P - For 3'IVT arrays
- % Probe set present - For miRNA arraysshrivass
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One thing to keep in mind is that caArray does not currently parse the contents of Comment[] columns and store the values in the database. But these annotations would be captured in the SDRF file itself, which is stored as is by caArray.
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