Building a new Protege version on Dev

1. A new release will be tagged in the github project https://github.com/ncievs/nci-protege.git
2. Clone the new release into your local build directory.
3. The clone will create a directory "nci-protege5".   Enter into the scripts subdirectory "cd nci-protege5/scripts/"
4. Run the build script, passing in the version number "./build.sh versionTag ncievs >> build.log".
5. Review the output for errors or build failures: "cat build.log | grep FAILURE"
6. Check the structure of the build.  The following folders and files should be present under <build-location>/nci-protege5/scripts/nci-protege5
   • binaryowl
   • explanation-workbench
   • metaproject
   • nci-protege_<date>.tar.gz
   • nci-protege_<date>.zip
   • owlapi
   • protege
   • protege-server
   • run-protege.sh
   • run-server.sh

Installing the server build

1. Navigate to the running instance of protege, on Dev this is /local/content/protege/scripts/
2. Shutdown the protege server: "./shutdown.sh" 
3. Archive the previous version of the services, which are these 2 directories in /local/content/protege:
   
   • protegeserver
   • protegedesktop
4. Copy the new protegeserver into the service directory "cp -r <build-location>/nci-protege5/scripts/nci-protege5/protege-server/target/server-distribution/server /local/content/protege/protegeserver"
5. Copy the new protegedesktop into the empty desktop directory "cp -r 

   <build-location>/nci-protege5/scripts/nci-protege5/protege/protege-desktop/target/protege-5.1.1-SNAPSHOT-platform-independent/Protege-5.1.1-SNAPSHOT /local/content/protege/protegedesktop"

6. From the /local/content/protege/scripts directory start the protege server: "./run-background.sh".  The server should start almost immediately
7. Confirm the service has started by checking /local/content/protege/logs/protserv-console.txt for "Admin server has started at port 9091"

Shutdown/Startup of Services

Shutdown

1. Navigate to /local/content/protege/scripts/
2. To shutdown the protegeserver: "./shutdown.sh" 

Startup

1. Navigate to /local/content/protege/scripts/
2. To startup protege server: "./run-background.sh"
3. Do "tail ../logs/protserv-console.txt" to check that the protege server is running.
4. Server is started when you see "Admin server has started at port 9091"