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h1. NCI Protégé 1.4.3 Release Notes

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National Cancer Institute Center for Bioinformatics \\
Protege 1.4.3 Release Notes
07 February 2011

h2. Product Changes

The objective of this release of Protégé 1.4.3 is to provide the remaining bugs fixes found in previous Protégé releases that have been determined to be a priority for the final release of Protégé Currently, there is no development planned after the 1.4.3 release.

h2. Behavior to be Aware Of

|| GForge number || Brief description of item || Workaround ||
| GF#30038 | Change of Semantic_Type value after changing PTs. |--- |
| GF#30265 | Possible bug in LQT | _If user encounters this issue and wants to continue to proceed with the clone immediately, they must resolve the invalid class name and delete and re-type the definition in the "Clone" dialog box. Then click OK to save_ |
| GF#30338 | If only 2 N&S restriction and one is removed through merge of filler values - shows as defined | _Users should probably manually check known referencing classes before or after the merge. User is able to correct the issue by either indicating that the concept is no longer fully defined or adding a condition that makes it fully defined._ |
| GF#30352 | Changing Concept Name in namespace and refreshing causes blank preferred name | _The workaround is to&nbsp;re-start the client._ |
| GF#30375 | After resolving referencing class in PreRetire, does not refresh referencing classes list | _If the user is aware of the refresh issue, they can continue editing without concequence. If they want to visually confirm that all referencing classes have been resolved, they can clear the PreRetire pane and re-drag in the class and examine the referencing classes sub-tab._ |
| GF#30376 | If rename class_name two classes, can never PreMerge them. | _The workaround is to toggle around in the OWLClasses panel until the classes appear with their full uris. It is then safe to use the renamed classes in merges/splits_ |
| GF#30378 | Null pointer if renamespace while class is loaded in Merge tab. | _The workaround is toggle around in the OWLClasses panel until the classes appear with their full uris.&nbsp; It is then safe to use the renames classes in merges/splits_ |
| GF#30401 | Inability to export data from DB to OWL file, and inability to class | _Cleanup scripts are available that server as the workaround_ |
| GF#30516 | Language on Definition not displayed in Edit Tab | _The workaround is to restart the Protege server._ |

h2. List of Bug Fixes
|| GForge number \\
(hyperlinked) || Brief description of item \\ ||
| [29517|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29517] | When invalid format is provided on a clone it doesn't retain previously entered Definition |
| [29752|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29752] | Generate Reports shows undesirable internal values |
| [29753|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29753] | Extra box character shows in generated report |
| [29758|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29758] | Duplicate restrictions are found in the class BRCA1_wt_Allele. |
| [29770|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29770] | Concept History Plugin - OLD_PARENT is deleted during save of concept history |
| [29923|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29923] | Unalble to search from box by hitting return key |
| [30082|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30082] | Explanation Server Does Not Properly Startup for NPO Vocabulary |
| [30111|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30111] | Modeler can't create workflow tasks |
| [30414|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30414] | Can edit a parent to a retired class. |
| [30416 |https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30416] | Workflow modeler cannot edit assignment |

h2. Other Items Closed
The defects in the following list were not reproducible, or were fixed as a by-product of refactoring, or were related to configuration setup.
|| GForge number \\
(hyperlinked) || Brief description of item \\ ||
| [29720|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=29720] | PreMerge "two concepts" after renaming them is not allowed. |
| [30265|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30265] | Possible bug in LQT |

h2. Remaining Issues
The defects in the following list were not reproducible, or were fixed as a by-product of refactoring, or were related to configuration setup.
|| GForge number \\
(hyperlinked) || Brief description of item \\ ||
| [30038|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30038] | Change of Semantic_Type value after changing PTs |
| [30305|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30305] | When cloning, not escaping definition if invalid class name |
| [30338|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30338] | If only 2 N&S restriction and one is removed through merge of filler values - shows as defined |
| [30352|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30352] | Changing Concept Name in namespace and refreshing causes blank preferred name |
| [30375|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30375] | After resolving referencing class in PreRetire, does not refresh referencing classes list |
| [30376|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30376] | If rename class_name two classes, can never PreMerge them |
| [30378|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30378] | Null pointer if rename namespace while class is loaded in Merge tab |
| [30401|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30401] | Inability to export data from DB to OWL file, and inability to classify |
| [30516|https://gforge.nci.nih.gov/tracker/?group_id=174&atid=822&func=detail&aid=30516] | Language on Definition not displayed in Edit Tab |

h2. CORE Product Dependencies

No caCORE dependencies. This software is used for editing and maintaining NCI Thesaurus and BiomedGT.

h2. Release History

|| Release || Date ||
| 1.0 | Jun 07 |
| 1.1 | Sept 07 |
| 1.2.0 | Dec 07 |
| 1.2.1 | Feb 08 |
| 1.2.2 | May 08 |
| 1.2.3 | Jul 08 |
| 1.2.3 Patch | Aug 08 |
| 1.3.0 | Mar 09 |
| 1.4.0 | Sep 09 |
| 1.4.1 | Jan 10 |
| 1.4.2 \\ | Sep 10 \\ |
| 1.4.3 | Feb 11 |
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