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National Cancer Institute Center for Bioinformatics \\
Product LexEVS 5.0 Release Notes \\
May 08 2009

h2. Product Changes

* *New Feature:* Removed convenience methods for codeToName
[EVS:CF#15222 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=15222&group_id=491&atid=1904]
* *New Feature:* Update to work with SDK 4.1
[EVS:CF#15942 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=15942&group_id=491&atid=1853]
* *New Feature:* Javadocs should open in new window
[EVS:CF#16686 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=16686&group_id=491&atid=1904]
* *New Feature:* LexBIG GUI launch support for OSX environment
[EVS:CF#16989 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=16989&group_id=491&atid=1853]
* *New Feature:* Import RRF Representation of Relationship Groups
[EVS:CF#17019 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17019&group_id=491&atid=1904]
* *New Feature:* CodingSchemeId not present in exported LexGrid XML
[EVS:CF#17183 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17183&group_id=491&atid=1904]
* *New Feature:* OWL Loader Enhancements
[EVS:CF#17233 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17233&group_id=491&atid=1904]
* *New Feature:* Finalize BDA for 5.0 release
[EVS:CF#17508 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17508&group_id=491&atid=1904]
* *New Feature:* Model revisions & readiness for Silver/Gold Compatibility 
(scope modified & approved 1/14/09)
[EVS:CF#17509 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17509&group_id=491&atid=1904]
* *New Feature:* 5.0 Data Services/SDK
[EVS:CF#17511 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17511&group_id=491&atid=1904]
* *New Feature:* 2009/01 model changes
(please see Gforge tracker for more detail on the nature of the changes and further descriptions)
[EVS:CF#18449 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=18449&group_id=491&atid=1904]
* *New Feature:* Add 'namespace' to the Lucene Indexes
[EVS:CF#19883 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19883&group_id=491&atid=1853]
* *New Feature:* Change name of ProtegeFramesLoader to RadlexProtegeFramesLoader
[EVS:CF#19888 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19888&group_id=491&atid=1853]
* *New Feature:* Rename getParentsOf() and getChildrenOf()
[EVS:CF#19889 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19889&group_id=491&atid=1853]
* *New Feature:* Support query of non-concept entities
[EVS:CF#19890 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19890&group_id=491&atid=1853]
* *New Feature:* Creation of XSL stylesheets for transformation of LexBig data to n-1 LexBig versions
[EVS:CF#20043 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20043&group_id=491&atid=1853]

* *Bug:* Implement getAssociation for EVS API web service
[EVS:CF#15091 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=15091&group_id=491&atid=1904]
* *Bug:* Two constructors create ConceptReferenceList methods throw exceptions
[EVS:CF#15976 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=15976&group_id=491&atid=1904]
* *Bug:* Example to dump/query auxiliary metadata
[EVS:CF#16508 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=16508&group_id=491&atid=1904]
* *Bug:* Better error handling for invalid search criteria in http interface
[EVS:CF#16579 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=16579&group_id=491&atid=1904]
* *Bug:* Users should have the ability to request Search results be sorted
[EVS:CF#17161 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17161&group_id=491&atid=1904]
* *Bug:* Remove JUnit test dependency on 'Automobiles' vocab for LexEVS Grid Services
[EVS:CF#17405 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17405&group_id=491&atid=1904]
* *Bug:* Change \-nf option to \-fe (fail on error)
[EVS:CF#17410 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17410&group_id=491&atid=1904]
* *Bug:* EntityDescription not assigned to the NCI PT (rdfs:label) using Scrubber output
[EVS:CF#17421 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=17421&group_id=491&atid=1904]
* *Bug:* LexBIG History 'getEditActionList' Error
[EVS:CF#19411 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19411&group_id=491&atid=1850]
* *Bug:* Owl loader fails when duplicate objectProperty is loaded from two namespaces
[EVS:CF#19462 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19462&group_id=491&atid=1850]
* *Bug:* Supported Coding Scheme default is set even when coding scheme name is specified in manifest
[EVS:CF#19484 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19484&group_id=491&atid=1850]
* *Bug:* Applying manifest with only an association forward/reverse name receives 'String index out of range' exception.
[EVS:CF#19485 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19485&group_id=491&atid=1850]
* *Bug:* CodedNodeGraph not resolving across ontology boundary
[EVS:CF#19492 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19492&group_id=491&atid=1850]
* *Bug:* Entity 'isActive' not being indexed correctly on Postgresql and MS Access
[EVS:CF#19573 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19573&group_id=491&atid=1850]
* *Bug:* Problem applying supportedNamespace
[EVS:CF#19586 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19586&group_id=491&atid=1850]
* *Bug:* Unable to load NCIT v9.01d and other large ontologies
[EVS:CF#19600 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19600&group_id=491&atid=1850]
* *Bug:* Equivalent CodingScheme on SupportedNamespace default value not being set correctly.
[EVS:CF#19628 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19628&group_id=491&atid=1850]
* *Bug:* Relationships not resolving that contain a Namespace that has a localId that does not match the CodingScheme.
[EVS:CF#19629 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19629&group_id=491&atid=1850]
* *Bug:* CodingSchemeProperties not being persisted to the database.
[EVS:CF#19702 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19702&group_id=491&atid=1850]
* *Bug:* LexBIG property behavior does not match EA model
[EVS:CF#19716 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19716&group_id=491&atid=1850]
* *Bug:* Transitivity Table not being built
[EVS:CF#19741 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19741&group_id=491&atid=1850]
* *Bug:* Supported Hierarchies not being fully populated in 2.3 - 5.0 Compatibility Test
[EVS:CF#19864 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19864&group_id=491&atid=1850]
* *Bug:* LexBIG 2.3 xml import command fails
[EVS:CF#19900 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19900&group_id=491&atid=1850]
* *Bug:* Metathesaurus history accessing wrong column name
[EVS:CF#20032 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20032&group_id=491&atid=1850]
* *Bug:* Owl loader ClassCast Exception while loading OWLObjectProperties
[EVS:CF#20037 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20037&group_id=491&atid=1850]
* *Bug:* Lucene Indexer fails with empty EntityDescription
[EVS:CF#20068 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20068&group_id=491&atid=1850]
* *Bug:* EMF loaders fail while inserting CodingScheme Properties
[EVS:CF#20070 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20070&group_id=491&atid=1850]
* *Bug:* Exception entering null into BIGINT column on PostgreSQL database.
[EVS:CF#20193 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20193&group_id=491&atid=1850]
* *Bug:* Blank description in the Service Context on grid portal
[EVS:CF#20419 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20419&group_id=491&atid=1850]

h2. Important Remaining Issues

Make use of logging consistent - eliminate system out.  We will address this if time permits
[EVS:CF#14971 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=14971&group_id=491&atid=1853]
The NCI_Thesaurus association Has_Salt_Form and Has_Free_Acid_Or_Base needs reverse name.  We will address this if time permits.
[EVS:CF#15975 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=15975&group_id=491&atid=1853]
gov.nih.nci.evs.domain.Atom.getLUI does not return value.  We will address this if time permits.
[EVS:CF#15667 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=15667&group_id=491&atid=1850]
Serializer Exception on org.apach.lucene.search.regenex. We will address this if time permits.
[EVS:CF#16678 | https://gforge.nci.nih.gov/tracker/?func=detail&group_id=491&aid=16678&atid=1850]
Results not Deserializing Properly when using QueryModifiers on CQL Queries
[EVS:CF#19406 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19406&group_id=491&atid=1850]
Root concepts found by ListHierarchyMetaBySource when running against NCI MetaThesaurus with source set to NCI are different from root concepts in NCI Thesaurus.
[EVS:CF#20354 | https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20354&group_id=491&atid=1850]

h2. CORE Product Dependencies

Refer to the [CORE Product Dependency Matrix|https://wiki.nci.nih.gov/x/hIx8] for the caCORE SDK and other software technologies on which this release of this product relies.

h2. Release History

|| Release || Date ||
| LexEVS 5.0 \\ | 12&nbsp;May 2009 \\ |
| LexEVS 4.2.1 \\ | 30 January 2009 \\ |
| LexEVS 4.2 \\ | 05 November 2008 \\ |
| EVS API 4.1.1 \\ | 08 August 2008 \\ |
| EVS API 4.1 \\ | 27 June 2008 \\ |
| EVS API 4.0 \\ | 07 November 2007 \\ |
| caCORE 3.2 \\ | 22 December 2006 \\ |
| caCORE 3.1 \\ | 27 March 2006 \\ |
| caCORE 3.0.1.3 \\ | 12 December 2006 \\ |
| caCORE 3.0.1.2 | 18 October 2005 \\ |
| caCORE 3.0.1.1 | 30 August 2005 \\ |
| caCORE 3.0.1 | 22 July 2005 \\ |
| caCORE 3.0 \\ | 31 March 2005 \\ |
| caCORE 2.1 \\ | 28 May 2004 \\ |
| caCORE 2.0.1 \\ | 19 December 2003 \\ |
| caCORE 2.0 \\ | 31 October 2003 \\ |
| caCORE 1.2 \\ | 13 June 2003 \\ |
| caCORE 1.1 \\ | 07 February 2003 \\ |
| caCORE 1.0 \\ | 29 August 2002 \\ |
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