{scrollbar:icons=false} {section} {column:width=30%} {panel:title=Page Contents} {toc:maxLevel=2} {panel} {panel:title=Documentation Table of Contents} * [Documentation Main Page|https://wiki.nci.nih.gov/x/hC5yAQ] * [Creation of the Cancer Gene Index|https://wiki.nci.nih.gov/x/DS9yAQ] * [Data, Metadata, and Annotations|https://wiki.nci.nih.gov/x/zC1yAQ] * [Cancer Gene Index Gene-Disease and Gene-Compound XML Documents|https://wiki.nci.nih.gov/x/8i1yAQ] * [caBIO APIs|https://wiki.nci.nih.gov/x/7zByAQ] * [Cancer Gene Index Shared Parsed Data and Code|https://wiki.nci.nih.gov/x/hzJyAQ] * [caBIO Portlet Templated Searches|https://wiki.nci.nih.gov/x/0C9yAQ] * [caBIO Home Page|https://wiki.nci.nih.gov/x/TTByAQ] * [caBIO iPhone Application|https://wiki.nci.nih.gov/x/VDFyAQ] * [caBIO Portlet Simple Searches|https://wiki.nci.nih.gov/x/-TByAQ] * [Glossary|https://wiki.nci.nih.gov/x/si9yAQ] * [Credits and Resources|https://wiki.nci.nih.gov/x/yS9yAQ] {panel} {info:title=To Print the Guide}We recommend you print one wiki page of the guide at a time. To do this, click the printer icon at the top right of the page; then from the browser File menu, choose Print. Printing multiple pages at one time is more complex. For instructions, refer to [WikiTrainFAQsTips:How do I print multiple pages?]. {info} {info:title=Having Trouble Reading the Text?}Resizing the text for any web page is easy. For information on how to do this in your web browser, refer to this [W3C tutorial|http://www.w3.org/WAI/changedesign] {multi-excerpt-include:wikicontent:Exit Disclaimer to Include|name=ExitDisclaimer|nopanel=true}.{info} {column} {column} h1. caBIO Portlet Templated Search Overview caBIO is a resource that integrates biomedical data on genes, proteins, clinical protocols, disease ontologies, pharmacological agents, pathways, and other entities with annotations, controlled vocabularies, and metadata models originating from [twenty-three data sources|https://wiki.nci.nih.gov/x/DoCl], including the Cancer Gene Index, the Pathway Interaction Database, and the University of California, Santa Cruz Distributed Annotation System. The [Templated Search tool of the caBIO Portlet on the caGrid Portal|http://cagrid-portal.nci.nih.gov/web/guest/community?p_p_id=cabioportlet_WAR_cabioportlets_INSTANCE_R7dp&p_p_lifecycle=0&p_p_state=normal&p_p_mode=view&p_p_col_id=column-1&p_p_col_count=1&_cabioportlet_WAR_cabioportlets_INSTANCE_R7dp_struts_action=%2Fcabioportlet%2Fview&tabs1=Templated%20Searches] quickly retrieves all genes that are associated with a particular disease, all of the genes associated with a particular compound, or all of the diseases and compounds that are associated with a particular gene. In addition, you also can evaluate the evidence from which these associations originated and the [codes|Data, Metadata, and Annotations#Evidence Codes] and [details|Data, Metadata, and Annotations#Role] that describe these associations. By using the caBIO Object Graph Browser, you may also view other annotations, such as [sentence status flags|Data, Metadata, and Annotations#sentence status flags], [negation indicators|Data, Metadata, and Annotations#Indicators], [cell line indicators|Data, Metadata, and Annotations#Indicators], and organism name. !TemplatedSearchHome.jpg|alt="Templated Search Home"! h1. Step-by-step Guides To use the Templated Search tool, follow the step-by-step instructions for using the Templated Search to find * [genes associated with a disease|https://wiki.nci.nih.gov/x/3C9yAQ], * [genes associated with a compound|https://wiki.nci.nih.gov/x/MTByAQ], or * [compounds and diseases associated with a gene|https://wiki.nci.nih.gov/x/QTByAQ]. {column} {section} |