Date
Attendees
Rajesh Thangudu, Anand Basu, Henry Rodriguez, Erika Kim, Paul Rudnick, Michael Holck, Gilberto Fragoso
Agenda
- General Updates
- Current data release in pipeline
- Updates to CPTAC3 UCEC proteome and phosphoproteome - adding plex 17, quantitative data, supplementary data
- Updates to CBTTC Pediatric Brain cancer study - supplementary data
- CPTAC3 LSCC - Proteome, Phosphoproteome, Acetylome, add Ubiquitylome
- Other datasets
- CPTAC2 BRCA Proteome (update), Phosphoproteome (update), Acetylome (new study)
- CPTAC2 OV Glycoproteome (new study)
- CPTAC3 GBM Acetylome (new study)
- ICPC - Korea PDA cancer - may need study accessions for publication by submitting genomic data set to DBGaP
- CPTAC3 PDA
- PDC portal and workspace feature improvements and bug fixes
- Adding Principal investigator details as Contacts to the study summary page
- Workspace improvement - Ability to add annotations in free format and use them as metadata to create experimental design and other study parameters
- CPTAC Data Portal migration, next steps
- Prioritization of building analytics dashboard to track user visits and data downloads
- Scientific committee meeting
- Now planned for September 28, 5-6 PM EST.
- External interactions
- API related questions from ISB-CGC
- Discuss PDC Data submission process with CRDC
- Current data release in pipeline
Discussion items
Time | Item | Who | Notes |
---|---|---|---|
Release |
| ||
Other Data sets in Pipeline |
| ||
Other Features to be added | File formats are being re-defined by ProteomeXchange Consortium for submission and PDC will apply the same to retain consistency. | ||
CPTAC Data portal Migration | Sudha | Get the green signal from Henry and team | |
Google Analytics | Sudha | Request for go ahead from Henry and team | |
Scientific Committee meeting | Rajesh | Share the agenda and goals with Henry and Erika |
Action items
Sudha - CPTAC Data Portal Migration: Some of the things we need are - if all or some of the data needs to be migrated, the order of ingestion of these datasets, plan for Phase-I legacy data, the studies that might not fit in the current data model, etc. This will allow us to come up with a plan for the road map discussion and balance it with new study releases.
- Sudha - Google Analytics: Determine Priority since majority of the downloads are still happening via CPTAC portal.