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Date

Attendees


  • Todd, Amy, Christina, Heather, Paula, Philip, Erika, Dawn, Cheryl, Renee

  • Regrets:  Jeff, Connie, Anju


Goals

Discussion items

ItemWhoNotes
White Paper
  • Timeline
    • Outline
      • Hard to set the deadlines without Elaine
      • Set up a folder in Box
    • Outline gap analysis
    • Writing assignments
    • First draft
Useful paper areas/topics
  • Preference for a matched normal sample, is there a best practice for when that's not available?
    • Maybe assay dependent?
    • Example, RNAseq just doesn't have a matched normal most of the time
    • RNAseq comparisons within the tumor set, are there recs for normal tissues?
    • ICDC as a repo for normal tissues?
  • WGS, WXS - any opinions on lack of normal?  Matched normals are the norm, but not always possible?
    • Screen out normal variants from a larger dataset?  
    • What would be a best practice?
    • Cell line experiments may represent a common case for lack of a normal
    • Not a lot of guidance out there for germline mutations

Action items

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