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The Current State of CTS2

(Compared to the LexEVS API based on the Draft Standard for Trial Use)

The CTS2 REST API in LexEVS 6.1

The OMG CTS2 1.1 Specification is written as a REST based architecture. It can be implemented as a minimal set of modules as a result.

CodeSystemCatalogVersions Read

Returns a set of CodeSystemVersions

http://bmidev4:5555/cts2/codesystemversions

Output

<CodeSystemVersionCatalogEntryDirectory xmlns="http://schema.omg.org/spec/CTS2/1.0/CodeSystemVersion" xmlns:core="http://schema.omg.org/spec/CTS2/1.0/Core"xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://schema.omg.org/spec/CTS2/1.0/CodeSystemVersion http://www.omg.org/spec/cts2/201206/codesystemversion/CodeSystemVersion.xsd" complete="COMPLETE" numEntries="25">
<core:heading>
<core:resourceRoot>codesystemversions</core:resourceRoot>
<core:resourceURI>http://bmidev4:5555/cts2/codesystemversions</core:resourceURI>
<core:accessDate>2013-09-13T15:03:13.627-05:00</core:accessDate>

</core:heading>


<entry href="http://bmidev4:5555/cts2/codesystem/chebi/version/January2012" about="urn:lsid:bioontology.org:ChEBI:January2012" formalName="ChEBI"documentURI="urn:lsid:bioontology.org:ChEBI:January2012" codeSystemVersionName="chebi-January2012">
<core:resourceSynopsis>
<core:value>Chemical Entities of Biological Interest</core:value>

</core:resourceSynopsis>


<core:officialResourceVersionId>January2012</core:officialResourceVersionId>
<versionOf uri="urn:lsid:bioontology.org:ChEBI">chebi</versionOf>

</entry>


<entry href="http://bmidev4:5555/cts2/codesystem/pizza.owl/version/version 1.2" about="http://www.co-ode.org/ontologies/pizza/2005/05/16/pizza.owl/version 1.2"formalName="pizza.owl" documentURI="http://www.co-ode.org/ontologies/pizza/2005/05/16/pizza.owl/version 1.2" codeSystemVersionName="pizza.owl-version 1.2">
<core:resourceSynopsis>
<core:value>pizza.owl</core:value>

</core:resourceSynopsis>


<core:officialResourceVersionId>version 1.2</core:officialResourceVersionId>
<versionOf uri="http://www.co-ode.org/ontologies/pizza/2005/05/16/pizza.owl">pizza.owl</versionOf>

</entry>


<entry href="http://bmidev4:5555/cts2/codesystem/HL7V3.0/version/2006_05" about="1.3.6.1.4.1.2114.108.1.9.137/2006_05" formalName="HL7 Vocabulary Version 3.0, 2006_05"documentURI="1.3.6.1.4.1.2114.108.1.9.137/2006_05" codeSystemVersionName="HL7V3.0-2006_05">
<core:resourceSynopsis>
<core:value>
Health Level Seven Vocabulary (HL7). Ann Arbor (MI): Health Level Seven, 1998-2006. Contact: Mark McDougall, Executive Director, Health Level Seven; 3300 Washtenaw Avenue, Suite 227, Ann Arbor, MI 48104-4250; Phone: (734)677-7777; Fax: (734)677-6622; Email: HQ@HL7.ORG ; Web site: www.HL7.ORG.
</core:value>



</core:resourceSynopsis>


<core:officialResourceVersionId>2006_05</core:officialResourceVersionId>
<versionOf uri="1.3.6.1.4.1.2114.108.1.9.137">HL7V3.0</versionOf>

</entry>


<entry href="http://bmidev4:5555/cts2/codesystem/WHO/version/1997" about="urn:oid:2.16.840.1.113883.6.230:1997" formalName="WHO Adverse Reaction Terminology, 1997"documentURI="urn:oid:2.16.840.1.113883.6.230:1997" codeSystemVersionName="WHO-1997">
<core:resourceSynopsis>
<core:value>
WHO Adverse Drug Reaction Terminology (WHOART). Uppsala (Sweden): WHO Collaborating Centre for International Drug Monitoring, 1997.
</core:value>



</core:resourceSynopsis>


<core:officialResourceVersionId>1997</core:officialResourceVersionId>
<versionOf uri="urn:oid:2.16.840.1.113883.6.230">WHO</versionOf>

</entry>

 

CodeSystemVersions Query

Returns a set of CodeSystemVersions based on a text match

http://bmidev4:5555/cts2/codesystemversions?matchvalue=nci_thesaurus&filtercomponent=resourceName

Output

<CodeSystemVersionCatalogEntryDirectory xmlns="http://schema.omg.org/spec/CTS2/1.0/CodeSystemVersion" xmlns:core="http://schema.omg.org/spec/CTS2/1.0/Core"xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://schema.omg.org/spec/CTS2/1.0/CodeSystemVersion http://www.omg.org/spec/cts2/201206/codesystemversion/CodeSystemVersion.xsd" complete="COMPLETE" numEntries="3">
<core:heading>
<core:resourceRoot>codesystemversions</core:resourceRoot>
<core:resourceURI>http://bmidev4:5555/cts2/codesystemversions</core:resourceURI>
<core:parameter arg="filtercomponent">
<core:val>resourceName</core:val>

</core:parameter>


<core:parameter arg="matchvalue">
<core:val>nci_thesaurus</core:val>

</core:parameter>


<core:accessDate>2013-09-13T14:38:02.284-05:00</core:accessDate>

</core:heading>


<entry href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.07e" about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#10.07e" formalName="NCI Thesaurus"documentURI="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#10.07e" codeSystemVersionName="NCI_Thesaurus-10.07e">
<core:resourceSynopsis>
<core:value>NCI Thesaurus</core:value>

</core:resourceSynopsis>


<core:officialResourceVersionId>10.07e</core:officialResourceVersionId>
<versionOf uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#">NCI_Thesaurus</versionOf>

</entry>


<entry href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a" about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#10.10a" formalName="NCI Thesaurus"documentURI="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#10.10a" codeSystemVersionName="NCI_Thesaurus-10.10a">
<core:resourceSynopsis>
<core:value>NCI Thesaurus</core:value>

</core:resourceSynopsis>


<core:officialResourceVersionId>10.10a</core:officialResourceVersionId>
<versionOf uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#">NCI_Thesaurus</versionOf>

</entry>


<entry href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/11.09d" about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#11.09d" formalName="Thesaurus.owl"documentURI="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#11.09d" codeSystemVersionName="NCI_Thesaurus-11.09d">
<core:resourceSynopsis>
<core:value>Thesaurus.owl</core:value>

</core:resourceSynopsis>


<core:officialResourceVersionId>11.09d</core:officialResourceVersionId>
<versionOf uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#">NCI_Thesaurus</versionOf>

</entry>



</CodeSystemVersionCatalogEntryDirectory>

CodeSystemVersion Read

Returns a specific code system version

http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.07e

Output

<CodeSystemVersionCatalogEntryMsg xmlns="http://schema.omg.org/spec/CTS2/1.0/CodeSystemVersion" xmlns:core="http://schema.omg.org/spec/CTS2/1.0/Core"xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://schema.omg.org/spec/CTS2/1.0/CodeSystemVersion http://www.omg.org/spec/cts2/201206/codesystemversion/CodeSystemVersion.xsd">
<core:heading>
<core:resourceRoot>codesystem/NCI_Thesaurus/version/10.07e</core:resourceRoot>
<core:resourceURI>
http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.07e
</core:resourceURI>


<core:accessDate>2013-09-13T15:22:32.721-05:00</core:accessDate>

</core:heading>


<codeSystemVersionCatalogEntry entryState="ACTIVE" about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#10.07e" formalName="NCI Thesaurus"documentURI="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#10.07e" state="FINAL" codeSystemVersionName="NCI_Thesaurus-10.07e">
<core:keyword>ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl</core:keyword>
<core:keyword>Thesaurus.owl</core:keyword>
<core:keyword>NCI Thesaurus</core:keyword>
<core:keyword>NCI_Thesaurus</core:keyword>
<core:keyword>NCI</core:keyword>
<core:resourceSynopsis>
<core:value>NCI Thesaurus</core:value>

</core:resourceSynopsis>


<core:sourceAndNotation>
<core:sourceAndNotationDescription>LexEVS</core:sourceAndNotationDescription>

</core:sourceAndNotation>


<core:officialResourceVersionId>10.07e</core:officialResourceVersionId>
<versionOf uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#">NCI_Thesaurus</versionOf>
<entityDescriptions>
http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.07e/entities
</entityDescriptions>



</codeSystemVersionCatalogEntry>



</CodeSystemVersionCatalogEntryMsg>

Code System Entities

http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entities

Output

<EntityDirectory xmlns="http://schema.omg.org/spec/CTS2/1.0/Entity" xmlns:core="http://schema.omg.org/spec/CTS2/1.0/Core" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"xsi:schemaLocation="http://schema.omg.org/spec/CTS2/1.0/Entity http://www.omg.org/spec/cts2/201206/entity/Entity.xsd" complete="PARTIAL" numEntries="50"next="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entities?page=1&maxtoreturn=50">
<core:heading>
<core:resourceRoot>codesystem/NCI_Thesaurus/version/10.10a/entities</core:resourceRoot>
<core:resourceURI>
http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entities
</core:resourceURI>


<core:accessDate>2013-09-13T15:33:42.494-05:00</core:accessDate>

</core:heading>


<entry about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C33945">
<core:name>
<core:namespace>NCI_Thesaurus</core:namespace>
<core:name>C33945</core:name>

</core:name>


<core:knownEntityDescription href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entity/C33945">
<core:describingCodeSystemVersion>
<core:version href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a">NCI_Thesaurus-10.10a</core:version>
<core:codeSystem uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#">NCI_Thesaurus</core:codeSystem>

</core:describingCodeSystemVersion>


<core:designation>Protein AF-9</core:designation>

</core:knownEntityDescription>



</entry>


<entry about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#R138">
<core:name>
<core:namespace>NCI_Thesaurus</core:namespace>
<core:name>R138</core:name>

</core:name>


<core:knownEntityDescription href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entity/R138">
<core:describingCodeSystemVersion>
<core:version href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a">NCI_Thesaurus-10.10a</core:version>
<core:codeSystem uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#">NCI_Thesaurus</core:codeSystem>

</core:describingCodeSystemVersion>



</core:knownEntityDescription>



</entry>


<entry about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C91509">
<core:name>
<core:namespace>NCI_Thesaurus</core:namespace>
<core:name>C91509</core:name>

</core:name>


<core:knownEntityDescription href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entity/C91509">
<core:describingCodeSystemVersion>
<core:version href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a">NCI_Thesaurus-10.10a</core:version>
<core:codeSystem uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#">NCI_Thesaurus</core:codeSystem>

</core:describingCodeSystemVersion>


<core:designation>ABC Transporter Pathway</core:designation>

</core:knownEntityDescription>



</entry>

 

Enitity Read

http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entity/C3399
<EntityDescriptionMsg xmlns="http://schema.omg.org/spec/CTS2/1.0/Entity" xmlns:core="http://schema.omg.org/spec/CTS2/1.0/Core" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://schema.omg.org/spec/CTS2/1.0/Entity http://www.omg.org/spec/cts2/201206/entity/Entity.xsd">  <core:heading>  <core:resourceRoot>codesystem/NCI_Thesaurus/version/10.10a/entity/C3399</core:resourceRoot>  <core:resourceURI>http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entity/C3399</core:resourceURI> <core:accessDate>2013-09-13T15:41:14.480-05:00</core:accessDate> </core:heading>  <EntityDescription>  <namedEntity about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C3399" entryState="ACTIVE">  <entityID> <core:namespace>NCI_Thesaurus</core:namespace> <core:name>C3399</core:name> </entityID>  <describingCodeSystemVersion> <core:version href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a">NCI_Thesaurus-10.10a</core:version> <core:codeSystem uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#">NCI_Thesaurus</core:codeSystem> </describingCodeSystemVersion>  <designation designationRole="ALTERNATIVE"> <core:value>SWELLING</core:value> </designation>  <designation designationRole="ALTERNATIVE"> <core:value>Swelling</core:value> </designation>  <designation designationRole="ALTERNATIVE"> <core:value>Swelling</core:value> </designation>  <designation designationRole="PREFERRED"> <core:value>Swelling</core:value> </designation>  <definition definitionRole="NORMATIVE">  <core:value>Enlargement; expansion in size; sign of inflammation</core:value> </definition>  <property>  <core:predicate uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Contributing_Source"> <core:namespace>NCI_Thesaurus</core:namespace> <core:name>Contributing_Source</core:name> </core:predicate>  <core:value>  <core:literal> <core:value>FDA</core:value> </core:literal> </core:value> </property>  <property>  <core:predicate uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#FDA_Table"> <core:namespace>NCI_Thesaurus</core:namespace> <core:name>FDA_Table</core:name> </core:predicate>  <core:value>  <core:literal> <core:value>Patient Code (Appendix B)</core:value> </core:literal> </core:value> </property>  <property>  <core:predicate uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Legacy_Concept_Name"> <core:namespace>NCI_Thesaurus</core:namespace> <core:name>Legacy_Concept_Name</core:name> </core:predicate>  <core:value>  <core:literal> <core:value>Swelling</core:value> </core:literal> </core:value> </property>  <property>  <core:predicate uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#primitive"> <core:namespace>NCI_Thesaurus</core:namespace> <core:name>primitive</core:name> </core:predicate>  <core:value>  <core:literal> <core:value>true</core:value> </core:literal> </core:value> </property>  <property>  <core:predicate uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#Semantic_Type"> <core:namespace>NCI_Thesaurus</core:namespace> <core:name>Semantic_Type</core:name> </core:predicate>  <core:value>  <core:literal> <core:value>Sign or Symptom</core:value> </core:literal> </core:value> </property>  <property>  <core:predicate uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#UMLS_CUI"> <core:namespace>NCI_Thesaurus</core:namespace> <core:name>UMLS_CUI</core:name> </core:predicate>  <core:value>  <core:literal> <core:value>C0038999</core:value> </core:literal> </core:value> </property>  <subjectOf>http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entity/C3399/subjectof</subjectOf>  <targetOf>http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entity/C3399/targetof</targetOf>  <parent uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#C4876" href="http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entity/C4876"> <core:namespace>NCI_Thesaurus</core:namespace> <core:name>C4876</core:name> </parent>  <children>http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entity/C3399/children</children>  <entityType uri="http://www.w3.org/2002/07/owl#Class"> <core:namespace>owl</core:namespace> <core:name>Class</core:name> </entityType> </namedEntity> </EntityDescription> </EntityDescriptionMsg>

 

Entity Query

http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.10a/entities?matchvalue=swelling

Output

<CodeSystemVersionCatalogEntryMsg xmlns="http://schema.omg.org/spec/CTS2/1.0/CodeSystemVersion" xmlns:core="http://schema.omg.org/spec/CTS2/1.0/Core"xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://schema.omg.org/spec/CTS2/1.0/CodeSystemVersion http://www.omg.org/spec/cts2/201206/codesystemversion/CodeSystemVersion.xsd">
<core:heading>
<core:resourceRoot>codesystem/NCI_Thesaurus/version/10.07e</core:resourceRoot>
<core:resourceURI>
http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.07e
</core:resourceURI>


<core:accessDate>2013-09-13T15:22:32.721-05:00</core:accessDate>

</core:heading>


<codeSystemVersionCatalogEntry entryState="ACTIVE" about="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#10.07e" formalName="NCI Thesaurus"documentURI="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#10.07e" state="FINAL" codeSystemVersionName="NCI_Thesaurus-10.07e">
<core:keyword>ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl</core:keyword>
<core:keyword>Thesaurus.owl</core:keyword>
<core:keyword>NCI Thesaurus</core:keyword>
<core:keyword>NCI_Thesaurus</core:keyword>
<core:keyword>NCI</core:keyword>
<core:resourceSynopsis>
<core:value>NCI Thesaurus</core:value>

</core:resourceSynopsis>


<core:sourceAndNotation>
<core:sourceAndNotationDescription>LexEVS</core:sourceAndNotationDescription>

</core:sourceAndNotation>


<core:officialResourceVersionId>10.07e</core:officialResourceVersionId>
<versionOf uri="http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#">NCI_Thesaurus</versionOf>
<entityDescriptions>
http://bmidev4:5555/cts2/codesystem/NCI_Thesaurus/version/10.07e/entities
</entityDescriptions>



</codeSystemVersionCatalogEntry>



</CodeSystemVersionCatalogEntryMsg>

 

 

Association Read

Association Query

Map Read

Map Query

ResolvedValueSet Read

ResolvedValueSet Query

ResolvedValueSetDefinition Read

ResolvedValueSetDefinition Query

 

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