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Date

Attendees


Agenda

  • Ongoing work  
    • Data release - production deployment later today
      • HNSCC from CPTAC3
      • Lung Cancer dataset of Academia Sinica - from ICPC, MacCoss 
      • Release of Simplified study identifiers and external references - now in stage
    • Support
      • Clustergram tutorial video
  • Portal and workspace related improvements  
    • Workspace usability improvement 
  • Next data sets / releases in pipeline
    • LSCC from CPTAC3 (July)
    • PDA from CPTAC3
    • LUAD confirmatory from CPTAC3   
    • APOLLO
    • Georgetown lung dataset
    • Organoid dataset from PNNL
  • Other items
  • NCI Updates

Discussion items

TimeItemWhoNotes

Ongoing workRajesh
  • Highest priority is release of 2 data sets: Head and Neck Squamous Cell Carcinoma and Lung Cancer from Academia Sinica.  All on stage at the moment, everything QC'd.  Simplified study identifiers now in Stage. Start production deployment later today.  NCI will do email blast when on production.  John asks that Matt and John be CC'd on production release notification.  PubMed ID for Lung Cancer not known yet, but publication imminent.

Workspace/Portal
Continuing to work on usability improvements

Next Data sets
Lung Squamous Cell Carcinoma.  PDA from CPTAC3 not public data.

Other Items
PDC Advisory Committee - add Sam Payne?  Someone from Proteomic Exchange.  Antonio (in the UK)?  Erik Deutch (in Seattle).  Need to think about how a biologist or clinician would view the data (Mandy Polovich, Karen Rodland).  Tool integration (Alexy Nagivsky).  ICPC (Yudo Chen - 12 hour time difference - Taiwan).  Present ideas at next meeting with Henry and Erika at next meeting.  Suggest size be not more than 6.  Need to talk with Henry to map out a good group.  Need to focus on community involvement.  Mike MacCoss will come up with list for next week.



FAIRsharing.org - metadata repository.  They picked up PDC and created an entry on their portal.

Identifier.org - will do this only after new identifiers on production.

Heard from Erika that they are close to launching the CRDC portal which may change the PDC URL (affects Identifier.org).

Paul Rudnick: Seven Bridges update (Philipe and Dave) - Philosopher up and running on SBG.  Connected with Rabix tool.  Longer update next week after testing completed.  Draft of SDRF - Sample and Data Relationship Format.

Action items

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