2020-05-13 PDC Weekly Meeting notes

Date

13 May 2020

Attendees

• Beyers, Matthew (NIH/NCI) [C]

Agenda

• Ongoing work  
• Data release - production deployment later today
• HNSCC from CPTAC3
• Lung Cancer dataset of Academia Sinica - from ICPC, MacCoss 
• Release of Simplified study identifiers and external references - now in stage
• Support
• Clustergram tutorial video
• Portal and workspace related improvements  
• Workspace usability improvement 
• Next data sets / releases in pipeline
• LSCC from CPTAC3 (July)
• PDA from CPTAC3
• LUAD confirmatory from CPTAC3   
  
• APOLLO
• Georgetown lung dataset
• Organoid dataset from PNNL
• Other items
• PDC Advisory committee
• ASMS and AACR virtual conferences
• External interactions
• SevenBridges + Univ of Michigan - Philosopher integration with SBG
• ISB-CGC - providing protein quant data through APIs
• PRIDE SDRF format -  Sample and Data Relationship Format (SDRF) -  https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects
  • Annotate a CPTAC dataset for PRIDE 
  • Evaluate the new PRIDE format - 
• CCDH
• Sam Payne
• Identifier.org
• FAIRsharing.org
• NCI Updates

Discussion items

Action items

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