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Date

Attendees



Goals

Discussion items

TimeItemWhoNotes
Immunology UpdateCheryl
  • Matt had imported the canine Nano IO Panel of genes - CONFIRM
    • 800 targets analyzed by the IO panel
    • Data in Jan Feb
    • 2 other datasets that could be good to include
      • FLOW
      • Immunohistochemistry
    • TDP - check that Nano targets were imported
    • Cheryl - send flow and IHC markers to Todd
    • Flow and IHC data may need hand entry

Imaging UpdatePaulaWorking on bringing in, each site a little different, seems to be going well.  Originally into TCIA, eventually into IDC.

Clinical/Pathology UpdateCheryl
  • All good so far
    • Matt has list of clin-path parameters
    • Redcap based case report forms
    • TDP to circle back with Cheryl that TDP has the right documents

Genomics UpdateDawn/Allison/Heather/Will
  • White Paper status - Provide ICDC's recommendation on best practices.
    • Need to clean up the latter half of the document
      • Elaine, Heather, Shaying, 
      • Assume all people who want to review have the document
      • Todd to check with Elaine, Shaying, edits by Monday if possible
      • Attempt to finalize by Monday 11/30
  • Data Harmonization
    • Goal is to provide an ICDC recommended pipeline on SBG.  Will provide a standard pipeline for users to create harmonized analysis and benchmarking
    • SBG currently doesn't have a working pipeline that does comparative
    • Tools are not immediately off the shelf
    • Is there a framework where a pipeline can be built
    • This is the group that will be providing SBG with direction
      • Looking for a more robust solution than just the basics
    • Elaine's group does have a pipeline that might be a starting point

NCI UpdateToby
  • Not available

Genomics and Non-Cancer WG mergeTodd

Data Submission projectionsTodd

Action items

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