| Name | Description | Link | |
|---|---|---|---|
| Pentaho | BI framework | https://github.com/pentaho | |
| Neo4j | Native graph DB | https://neo4j.com/ | |
| Neo4j visualization | Tools to view the graphDB | https://neo4j.com/developer/guide-data-visualization/ | |
| SciGraph | Stores ontologies in a native graph backend | https://github.com/SciGraph/SciGraph | |
| Kettle (Pentaho) | ETL tool | https://github.com/pentaho/pentaho-kettle | |
| Neptune (AWS) | Native graph db | https://docs.aws.amazon.com/neptune/#lang/en_us | |
| KNIME | Workflow engine for data science | ||
| CWL | Common Workflow Language | Common Workflow Language User Guide | |
| TinkerPop (Apache) | Open graph computing framework | http://tinkerpop.apache.org/ | |
| Tidy Data | Conceptual framework for arranging data | The actual paper by Hadley Wickham | |
| Elastic Search (Elastic) | "Document" database | https://www.elastic.co/ | |
| Pypher | Python Library to write Code in Cypher | https://github.com/emehrkay/Pypher | |
| WDL | Workflow Description Language (Broad) | https://software.broadinstitute.org/wdl/ | |
| Cromwell | WDL runner | https://github.com/broadinstitute/cromwell | |
| Rabix | CWL Runner | http://rabix.io/ | |
| GA4GH Cloud Workstream | DOS, WES, TES, TRS | https://github.com/ga4gh | |
| Toil | CWL/WDL runner and WES implementation | http://toil.ucsc-cgl.org/ | |
| FHIR (Fast Health Interoperability Resources) | Framework for intersystem communication of health information | https://hl7.org/fhir/ | |
| Nextflow | Workflow approach using traditional programming languages | ||
| Model Mapper | Maps from one model to another using scripting. | http://modelmapper.org/ | |
DICOM viewer | Online Image viewer | http://www.microdicom.com/ | |
| DICOM server | Orthanc | https://www.orthanc-server.com/download.php | |
| DICOM viewer | OHIF viewer | http://ohif.org/ | |
| NBIA installation package | National Biomedical Imaging Archive | National Biomedical Imaging Archive - NBIA#NBIA-NBIAInstallationFilesandReleaseNotes | |
| NCI Imaging community call | Call for imaging community | NCI Imaging and Informatics Community Webinar | |
| De-identification info @ TCIA | de-identification notes | https://wiki.cancerimagingarchive.net/display/Public/De-identification+Knowledge+Base | |
| UCSC Genome Browser | Genome browser | UCSC Genome Browser | |
| Genomics at scale | Genomics platform implemented in Apache Spark | Data Bricks Delta |
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