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National Cancer Institute Center for Bioinformatics
Product LexEVS 5.0 Release Notes
May 08 2009

Product Changes

  • New Feature: Removed convenience methods for codeToName
    EVS:CF#15222
  • New Feature: Update to work with SDK 4.1
    EVS:CF#15942
  • New Feature: Javadocs should open in new window
    EVS:CF#16686
  • New Feature: LexBIG GUI launch support for OSX environment
    EVS:CF#16989
  • New Feature: Import RRF Representation of Relationship Groups
    EVS:CF#17019
  • New Feature: CodingSchemeId not present in exported LexGrid XML
    EVS:CF#17183
  • New Feature: OWL Loader Enhancements
    EVS:CF#17233
  • New Feature: Finalize BDA for 5.0 release
    EVS:CF#17508
  • New Feature: Model revisions & readiness for Silver/Gold Compatibility
    (scope modified & approved 1/14/09)
    EVS:CF#17509
  • New Feature: 5.0 Data Services/SDK
    EVS:CF#17511
  • New Feature: 2009/01 model changes
    (please see Gforge tracker for more detail on the nature of the changes and further descriptions)
    EVS:CF#18449
  • New Feature: Add 'namespace' to the Lucene Indexes
    EVS:CF#19883
  • New Feature: Change name of ProtegeFramesLoader to RadlexProtegeFramesLoader
    EVS:CF#19888
  • New Feature: Rename getParentsOf() and getChildrenOf()
    EVS:CF#19889
  • New Feature: Support query of non-concept entities
    EVS:CF#19890
  • New Feature: Creation of XSL stylesheets for transformation of LexBig data to n-1 LexBig versions
    EVS:CF#20043
  • Bug: Implement getAssociation for EVS API web service
    EVS:CF#15091
  • Bug: Two constructors create ConceptReferenceList methods throw exceptions
    EVS:CF#15976
  • Bug: Example to dump/query auxiliary metadata
    EVS:CF#16508
  • Bug: Better error handling for invalid search criteria in http interface
    EVS:CF#16579
  • Bug: Users should have the ability to request Search results be sorted
    EVS:CF#17161
  • Bug: Remove JUnit test dependency on 'Automobiles' vocab for LexEVS Grid Services
    EVS:CF#17405
  • Bug: Change -nf option to -fe (fail on error)
    EVS:CF#17410
  • Bug: EntityDescription not assigned to the NCI PT (rdfs:label) using Scrubber output
    EVS:CF#17421
  • Bug: LexBIG History 'getEditActionList' Error
    EVS:CF#19411
  • Bug: Owl loader fails when duplicate objectProperty is loaded from two namespaces
    EVS:CF#19462
  • Bug: Supported Coding Scheme default is set even when coding scheme name is specified in manifest
    EVS:CF#19484
  • Bug: Applying manifest with only an association forward/reverse name receives 'String index out of range' exception.
    EVS:CF#19485
  • Bug: CodedNodeGraph not resolving across ontology boundary
    EVS:CF#19492
  • Bug: Entity 'isActive' not being indexed correctly on Postgresql and MS Access
    EVS:CF#19573
  • Bug: Problem applying supportedNamespace
    EVS:CF#19586
  • Bug: Unable to load NCIT v9.01d and other large ontologies
    EVS:CF#19600
  • Bug: Equivalent CodingScheme on SupportedNamespace default value not being set correctly.
    EVS:CF#19628
  • Bug: Relationships not resolving that contain a Namespace that has a localId that does not match the CodingScheme.
    EVS:CF#19629
  • Bug: CodingSchemeProperties not being persisted to the database.
    EVS:CF#19702
  • Bug: LexBIG property behavior does not match EA model
    EVS:CF#19716
  • Bug: Transitivity Table not being built
    EVS:CF#19741
  • Bug: Supported Hierarchies not being fully populated in 2.3 - 5.0 Compatibility Test
    EVS:CF#19864
  • Bug: LexBIG 2.3 xml import command fails
    EVS:CF#19900
  • Bug: Metathesaurus history accessing wrong column name
    EVS:CF#20032
  • Bug: Owl loader ClassCast Exception while loading OWLObjectProperties
    EVS:CF#20037
  • Bug: Lucene Indexer fails with empty EntityDescription
    EVS:CF#20068
  • Bug: EMF loaders fail while inserting CodingScheme Properties
    EVS:CF#20070
  • Bug: Exception entering null into BIGINT column on PostgreSQL database.
    EVS:CF#20193
  • Bug: Blank description in the Service Context on grid portal
    EVS:CF#20419

Important Remaining Issues

Make use of logging consistent - eliminate system out. We will address this if time permits
EVS:CF#14971
The NCI_Thesaurus association Has_Salt_Form and Has_Free_Acid_Or_Base needs reverse name. We will address this if time permits.
EVS:CF#15975
gov.nih.nci.evs.domain.Atom.getLUI does not return value. We will address this if time permits.
EVS:CF#15667
Serializer Exception on org.apach.lucene.search.regenex. We will address this if time permits.
EVS:CF#16678
Results not Deserializing Properly when using QueryModifiers on CQL Queries
EVS:CF#19406
Root concepts found by ListHierarchyMetaBySource when running against NCI MetaThesaurus with source set to NCI are different from root concepts in NCI Thesaurus.
EVS:CF#20354

CORE Product Dependencies

Refer to the CORE Product Dependency Matrix for the caCORE SDK and other software technologies on which this release of this product relies.

Release History

Release

Date

LexEVS 5.0

12 May 2009

LexEVS 4.2.1

30 January 2009

LexEVS 4.2

05 November 2008

EVS API 4.1.1

08 August 2008

EVS API 4.1

27 June 2008

EVS API 4.0

07 November 2007

caCORE 3.2

22 December 2006

caCORE 3.1

27 March 2006

caCORE 3.0.1.3

12 December 2006

caCORE 3.0.1.2

18 October 2005

caCORE 3.0.1.1

30 August 2005

caCORE 3.0.1

22 July 2005

caCORE 3.0

31 March 2005

caCORE 2.1

28 May 2004

caCORE 2.0.1

19 December 2003

caCORE 2.0

31 October 2003

caCORE 1.2

13 June 2003

caCORE 1.1

07 February 2003

caCORE 1.0

29 August 2002


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