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Agenda

EVS Discussion


SYSTEMS
Systems

Discussion Points:

  • Status of migration on new QA tier.
    • Archive old server
  • Stage migration status
    • Not yet started
  • Systems new vendors
    • 2 Prod tickets pending for over a week for LexEVS
      • CTS2 deployed succesfully
      • Report Exporter not complete - is AWS so a different team?
  • Semantics URL to be applied to Stage tier - handed to Cuong

Decision Points:


LEXEVS UPDATES

LexEVS Sprint Status


Current Sprint - Sprint 203 (Jan 30 - Feb 13 2023)

16X237 Agile Development - Sprint Status#16X237AgileDevelopmentSprintStatus-Sprint203
  • LexEVS CTS2 Service - on Stage, Prod requested
  • Report Exporter - on Stage, Prod requested
  • Vue3 Updates for Report Exporter nearing completion
  • Working on updating browser for Spring 5 - on dev
  • Started working on update of vulnerable dependencies
  • Metrics and other reports due next week
Future Planning

Discussion Points:

 Planning for Mayo team in the coming fiscal year:

  • Java 8 migration to 11
    • EOL Sep '23
    • Waiting for info on migration deadlines
    • Implications for Tomcat containers
    • JREs available on servers
  • EVS Compare
Technical Debt remediation

LexEVS Code Debt Refactoring

  • Do code inventory for Java migration
    • Work begun on implementation
    • Need risk assessment of the work - what is the risk of NOT doing things
  • Vulnerable dependencies
  • Java 8 to 11
  • Other dependencies

CTS2 Mapping/URI Resolver

Discussion Points:

  • On Prod, verified

Decision Points:

caDSR Query

Have been asking for other standalone terminologies, expected that they will use CTS2

Statistics Dashboard

Discussion Points: 

  • Google analytics - Retiring GA and going to GA4
    • May need to only update GA, not applications. 
      • Need further experimentation, documentation
      • Per Kim - looks like scripts need to be updated from GA3 to GA4
    • No analytics being collected by EVS Explore
    • Add to Report Exporter and EVS Compare
      • EVS Exporter working
      • Create token for EVS Compare - though it is not ready to gather yet
    • TS to do paragraph on how to migrate

Decision Points:

Comparison/Mapping Tool

Discussion Points:

  • March timeframe
    • Specs document to be put together in March
    • Look at technical debt updates 
    • Java 11

Decision Points:

EVS transition to virtual machines

Discussion Points:

  • Server Migration 2021
    • QA2
      • We are waiting for approval to start using QA2 in earnest, will need to coordinate with team.
    • Stage 
      • Instance of VM instantiated. Needs configuration. 
      • Blocker: Waiting to hear from Systems on what is needed to progress, if they have configuration information.
      • Followed by Prod then DataQA

Decision Points:

Report Exporter

Discussion Points:

  • Tomcat and Spring Vulnerability noted on the Report Exporter
    • Deployed on Stage
    • Request put in for Prod - ticket: NCI-RITM0415989 (Mark following up)
  • Working on update to Vue3 (JavaScript Framework). EVSREPEXP-451
    • Due: Mar 10 (end of sprint 305); on week 12 of estimated 16
    • master ticket: EVSREPEXP-442 - Migrate Vue.js version from 2.0 to 3.0
    • Description
      • On Dev and being regression tested
      • 3 different phases
        • Dependencies updated - complete
        • Squashing errors generated from update - complete
        • Unit testing 
          • bug squashing from this - in progress
          • 8 or 9 issues left
          • Code detection issue requiring details page restructure
  • Look at updating to Java 11 - code inventory work
    • Code inventory complete. Ticket: EVSREPEXP-463

Decision Points:

AWS Cloud to be in Separate Account

Discussion Points

  • No Response as of yet

Decision Points:

Team Absences


Mayo Team - Tracy off 16, 17

MSC -

Leidos - Mark off Feb 14-24

Systems - 


EVS SERVICE AND ARCHITECTURE GROUP UPDATES
EVS Service and Architecture Group

Discussion Points:

  • Remote API and URI Resolver retirement
    • Looking at 3 months - April timeframe 
    • Need an announcement sent out ahead of time - Draft sent

Decision Points:


DATA UPDATES
Data

Discussion Points: 

  • 23.01e released - some issues, under review
  • monthly data next week

Decision Points:


BROWSER UPDATES

Browser

Discussion Points:

  • Spring 5 browser version on Dev
    • properties extension requires update - in progress
    • Expected 2 weeks for app completion
    • Designing ideas for testing in absence of remote API
  • Expect requests from Oberon
  • SPARQL-EVS interface to be discussed off-line

Decision Points: 


QA UPDATES

QA

Discussion Points:  (see chart)

Decision Points: 

  • tag 1.7 EVS Rest and Explore being tested



TERMINOLOGIES LIFECYCLE REPORT

Terminology Updates and Schedule 

Discussion Points: 

Decision Points: 

Mark Benson TPM Update


LexEVS Spring Migration Progress



Technical Debt Related Update

Estimated Effort

Status

Ticket

Code Inventory4 daysComplete
Lexevs - update "easy" jars2 daysComplete
Update ddlutils - research and design3 daysComplete
Update ddltils - implementations10 daysIn Progress
Lexevs Unit testing2 days

CTS2 lexevs-service vulnerability update2 days

CTS2 unit testing2 days

QA Lexevs / CTS2

3 days



Repair QA issues2 days

Deployment Lexevs / CTS25 days (elapsed)

Update LexEVS to Java 11 - research and design4 days

LexEVS Java 11 implementation5 days

lucene 9 - research and design8 days

lucene 9 - implementation15 days

LexEVS Java 11 unit testing3 days

CTS2 lexevs-service Java 11 - research and design 3 days

CTS2 lexevs-service Java 11 implementation3 days

CTS2 unit testing2 days

QA Lexevs / CTS2

3 days



Repair QA issues2 days

Update Jenkins1 day

Deployment Lexevs / CTS210 days (elapsed)

lexevs-service-rest-docs vulnerability update design2 days

lexevs-service-rest-docs vulnerability implementation4 days

lexevs-service-rest-docs unit testing1 day

lexevs-service-rest-docs QA

1 day



lexevs-service-rest-docs deployment4 days (elapsed)

lexevs-service-rest-docs Java 11 design

2 days



lexevs-service-rest-docs Java 11 implementation3 days

lexevs-service-rest-docs unit testing1 day

lexevs-service-rest-docs QA

1 day



lexevs-system-test design4 days

lexevs-system-test implementation6 days

lexevs remaining dependency updates - design10 days

lexevs remaining dependency updates - implementation20 days

CTS2 remaining dependency updates - design1 day

CTS2 remaining dependency updates - implementation3 days

Unit testing2 days

QA2 days

Deployment5 days (elapsed)

Total Effort (Approximately)104 days

Technical Debt Related Update

Estimated Effort

Status

Report Exporter vulnerabilities - design4 days
Report Exporter vulnerabilities - implementation5 days
Unit testing2 days
QA2 days
Deployment5 days (elapsed)

Vocabularies Slated for Production

 Terminology Updates and Schedule


Vocabulary Name

Local Name

Version

Arrival Date

Loaded to data-qa DB

Date to Stage

Date to Production

Vocabulary Name in LexBIG

Short Name

Version identifier

Date the vocabulary arrived for processing

Has the vocabulary been loaded to the data-qa database?

Approximate date the vocabulary version is scheduled to move to staging

Approximate date the vocabulary version is scheduled to move to production

NCI ThesaurusNCIt23.01e01/31/2023yes02/09/232/10/23
NCIt-ChEBINCIt-ChEBIJan202301/31/2023yes02/09/232/10/23
NCIt-HGNCNCIt-HGNCJan202301/31/2023yes02/09/232/10/23
SwissProtSwissProtJan202301/31/2023yes02/09/232/10/23
ChEBIChEBI




GOGO




HGNCHGNC




QA Schedule and Status

see QA Scheduling and Status



SECTION FOR FUNCTIONAL SYSTEM TESTING STATUS ::

Application and Version

Percentage Complete

Estimated Completion Date per Iteration

Priority Level 

Type Of Testing

Current Tier for Release (DEV, QA, Stage, Prod)

Expected Production Date

EVS REST API (v1.6)

100%

5/27/2022

High

Progression + Regression 

QA

6/6/2022

EVS Explore (v1.6)

100%

5/27/2022

High

Progression + Regression

QA

6/6/2022

EVS REST API(v1.6)

100%

6/1/2022

High

Regression

Stage

6/6/2022

EVS Explore(v1.6)

100%

6/2/2022

High

Regression

Stage

6/7/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/1/2022

High

Regression

Stage

6/3/2022

EVS REST API(22.05e) - Monthly Data Deployment

100%

6/3/2022

High

Regression

Production

6/3/2022

EVS REST API(v1.6)

100%

6/6/2022

High

Regression

Production

6/6/2022

EVS Explore(v1.6)

100%

6/7/2022

High

Regression

Production

6/7/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/6/2022

High

Regression

Production

6/8/2022

EVS REST API(22.06d) - Monthly Data Deployment

100%

6/30/2022

High

Regression

Stage , Production

6/30/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment

100%

7/8/2022

High

Smoke

Stage,Production

7/8/2022

NCIt,NCIm,TermForm(22.05e + GO & HGNC Jun 2022 Deployment)

100%

6/3/2022

High

Regression

Stage

6/6/2022

NCIt,NCIm,TermForm(22.06d) - Monthly Data Deployment100%7/8/2022HighSmokeStage,Production7/8/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/12/2022HighSmokeStage7/12/2022
NCIt,NCIm,TermForm(ChEBI, GO & HGNC July 2022 Deployment)100%7/13/2022HighSmokeProduction7/13/2022

EVS REST API(22.07d) - Monthly Data Deployment

100%

7/27/2022

High

Regression

Stage , Production

7/27/2022

NCIt,NCIm,TermForm(22.07d) - Monthly Data  Deployment100%8/1/2022HighSmokeStage,Production8/1/2022
NCIt,NCIm,TermForm(CanMED, GO & HGNC AUG 2022 Deployment)100%8/3/2022HighSmokeStage,Production8/3/2022

EVS REST API - 1.6.1 (Hot Fix Deployment)

100 %

8/3/2022

Highest

Progression + Regression

Stage,Production

8/4/2022


Attendees

Name

Role

Present

Remennik, LyubovNIH/NCI

Safran, Tracy

NIH/NCI [C]
Ong, Kim LNIH/NCI [C]
Lucas, Jason RNIH/NCI [C]
Bauer, Scott  NIH/NCI [C]
Alkis, BarryNIH/NCI [C]
Solie, ChuckNIH/NCI [C]
Truong, TracyNIH/NCI [C]
Kondareddy, SwathiNIH/NCI [C]
Singh, ItendraNIH/NCI [C]
Zhang, ChaoNIH/NCI [C]
Johnson, ConnieNIH/NCI [C]
Whiteman, LoriNIH/NCI [C]
Benson, MarkNIH/NCI [C]
Andrew MooreNIH/NCI [C]



JIRA Issues


Recent EVS Stats Dashboard Related Bugs and Features (within last week)

Key Summary T Created Reporter P Status
Refresh

Recent Report Exporter Related Bugs and Features (within last week)

Key Summary T Created Reporter P Status
Refresh

Recent LexEVS Related Bugs and Features (within last week)

Key Summary T Created Reporter P Status
Refresh

Recent CTS2 Service Related Issues (within last week)

Key Summary T Created Updated Due Assignee Reporter P Status Resolution
Refresh

6.5 LexEVS Related Issues

Key Summary T Created Updated Due Assignee Reporter P Status Resolution
Refresh

6.5 CTS2 Service Related Issues

Key Summary T Created Updated Due Assignee Reporter P Status Resolution
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