Date
Attendees
| Name | Attended |
|---|---|
| Jayashree Kalpathy-Cramer | |
| Ulli Wagner | yes |
| Carolyn Klinger | yes |
| Benjamin Bearce | yes |
Goals
- Status Update for Medici Helpdesk
Currently supported challenges
| Name of Challenge | Organization / Meeting | Medici instance used | Release | Release Test data | Number of Participants | Closing Date | Will the challengeremainopen? | Comments |
|---|---|---|---|---|---|---|---|---|
| SPIE | SPIE Organizers | http://spiechallenges.cloudapp.net/competitions/14 | October 15,2018 | December 1,2018 | 428 individuals or teams | December 20,2018 | Yes | Challenge will remain open; without end date for now |
AAPM Lung Challenge Computed tomography ventilation imaging evaluation 2019 (CTVIE19) | AAPM | http://aapmchallenges.cloudapp.net/competitions/35 | April 5,2019 | April 5,2019 | 56 individuals or teams | May 31,2019 | Yes | Conversation with organizer ongoing. Organizer processes data on his end; use of Medici somewhat limited User can no longer submit; data is being evaluated |
AAPM Head/Neck Challenge AAPM RT-MAC Challenge | AAPM | http://aapmchallenges.cloudapp.net/competitions/34 | April 16, 2019 | Pre-AAPM June 7, 2019 AAPM Live Challenge July 15, 2019 | 58 individuals or teams | See description of challenge for details / phases | Competition to start on April 15. | |
| MICCAI Brain Tumor challenge | MICCAI | June | Test phase has ended on 9/18/2019. | Max 5 submissions per account (can be a team or an individual) | Competition was officially accepted for the MICCAI conference | Tahsin Kurc has identified the top entries. NIH team will get them soon. | ||
| QIN Breast Challenge | Paul Kinahan University of Washington = challenge organizer Awaiting responses from him to be able to setup page/competition | Release dates currently pending from the organizers. Organized with Keyvan Farahani |
Potential challenges:
| Name of Challenge | Organization / Meeting | Medici instance used | Release | Release Test data | Number of Participants | Closing Date | Will the challengeremainopen? | Comments |
|---|---|---|---|---|---|---|---|---|
| MRI deidentification for NF event | Robert Allaway from Sage Bionetworks and Wenli Cai from MGH. | na | na | na | na | na | na | A Hackathon for the NF Conference. The hackathon is a competition to NF volumetric image analysis, which is a three days event for participants to compete for the solutions to some clinical challenges to NF imaging. |
Discussion items
| Time | Item | Who | Notes |
|---|---|---|---|
| Action Items | None | ||
| Monthly status reports | August report - DONE | ||
| Contract status |
| ||
| New challenges | see list above | ||
| Issues | Do we have release versions? | ||
| Documentation | Installing MedICI and CodaLab | ||
| caMicroscope documentation | https://wiki.nci.nih.gov/display/SEER/caMicroscope+User+Guide | ||
| ePad documentation | https://epad.stanford.edu/ | ||
| Upcoming meetings | 10/3 or 10/17 - demo of how a challenge submission as docker container is run and evaluated. Ben will take screenshots while running one challenge submission. | ||
| Invoices | |||
| Documentation | Review of the installation documentation Seems most was copied from Codalab documentation Ben reviewed documentation, and wrote additional steps or indicated steps that can be removed. Ben suggests that it may be easier to just his documentation instead of fixing | ||
| Incoming help desk requests | |||
| ePad and caMicroscope integration | Example sites have been stood up but it contains an old version of Codalab |
Action items
- Review documentation Unknown User (117153655167770452852)
- Send information regarding needed documentation updates to Klinger, Carolyn (NIH/NCI) [C] Unknown User (117153655167770452852)
- Integrate link to Medici helpdesk / decide if link to Codalab help should be maintained in addition to the link to the NCI wiki Unknown User (117153655167770452852)
- MICCAI LIver challenge - talk to Keyvan about hosting arrangements Wagner, Ulrike (NIH/NCI) [C]
