NIH | National Cancer Institute | NCI Wiki  

Date

Attendees

NameAttended
Jayashree Kalpathy-CramerNo
Ulli WagnerYes
Carolyn KlingerYes
Benjamin BearceYes

Goals

  • Status Update for Medici Helpdesk

Currently supported challenges

Name of ChallengeOrganization / MeetingMedici instance
used

Release
Training data

Release
Test data
Number of
Participants
Closing DateWill the challenge remain open?Comments

Computed tomography ventilation imaging evaluation 2019 (CTVIE19):

AAPM Lung Challenge

AAPM

OK

http://aapmchallenges.cloudapp.net/competitions/35April 5,2019April 5,201956 individuals or teamsMay 31,2019Yes

Conversation with organizer ongoing. Organizer processes data on his end; use of Medici somewhat limited

User can no longer submit; data is being evaluated


AAPM Head/Neck Challenge

AAPM RT-MAC Challenge

AAPM

OK

http://aapmchallenges.cloudapp.net/competitions/34April 16, 2019

Pre-AAPM

June 7, 2019

AAPM Live Challenge

July 15, 2019

58 individuals or teams
See description of challenge for details / phases

Competition to start on April 15.


MICCAI Brain Tumor challenge

MICCAI

  1. URL not working
  2. and 3. are working

https://cpm2019.nci.nih.gov/

http://miccai2019.eastus.cloudapp.azure.com/

http://miccai2019.eastus.cloudapp.azure.com/competitions/2

June

Test phase has ended on 9/18/2019.


Max 5 submissions per account (can be a team or an individual)

Competition was officially accepted for the MICCAI conference.

Top participants will go to MICCAI.

2020/01/23

First link was within NCI, first and second URL are duplicates. NCI instance has been taken down.

QIN Breast Challenge

Paul Kinahan University of Washington = challenge organizer

Awaiting responses from him to be able to setup page/competition






Release dates currently pending from the organizers.

Organized with Keyvan Farahani


Potential challenges:

Name of ChallengeOrganization / MeetingMedici instance
used

Release
Training data

Release
Test data
Number of
Participants
Closing DateWill the challengeremainopen?Comments
MRI deidentification for NF event

Robert Allaway from Sage Bionetworks and Wenli Cai from MGH.


na

nanananana

A Hackathon for the NF Conference. The hackathon is a competition to NF volumetric image analysis, which is a three days event for participants to compete for the solutions to some clinical challenges to NF imaging.

MICCAI






under review by MICCAI
QIN PET-FDG






blanket approval

Discussion items


TimeItemWhoNotes

Action Items
None

Monthly status reports

OK


Contract status

Contract still at MGH for review



Strategy meeting
  • review paper
  • open challenges back up (contract / funding)
  • website
  • follow up meeting on 3/13/2020, 9:00 am EDT

Website





http://medici-codalab-master.eastus.cloudapp.azure.com:5000/

Purpose: Promote the Medici platform, showcase what can be done with Medici and what it has been used for.

Decisions:

  • keep the documentation on wiki and link to it
  • Contact us
  • What is a challenge?
  • How to request a challenge to be hosted on Medici (what information is necessary)
  • replicate epad, caMicroscope, Docker information in an easy understandable form

Ideas:

  • describe more about ePad, caMicroscope, and Docker
  • Define categories of challenges
    • Open, submission possible
    • Challenge closed but still accessible
    • Challenge closed, no longer accessible
  • Video snapshots (<1min per video)
  • Describe what makes Medici special and different from other challenge management platforms (free, focused on imaging challenges, radiology and pathology)



New challenges
 see list above

Issues


Documentation

Installing MedICI and CodaLab


Upcoming meetings



Invoices
MGH cannot invoice until contract has been signed

Incoming help desk requests



ePad and caMicroscope integration
Example sites have been stood up but it contains an old version of Codalab

Action items