NIH | National Cancer Institute | NCI Wiki  

Date

Attendees

NameAttended
Jayashree Kalpathy-Cramer
Ulli WagnerYes
Carolyn KlingerYes
Benjamin BearceYes

Goals

  • Status Update for Medici Helpdesk

Currently supported challenges

Name of ChallengeOrganization / MeetingMedici instance
used

Release
Training data

Release
Test data
Number of
Participants
Closing DateWill the challenge remain open?Comments

Computed tomography ventilation imaging evaluation 2019 (CTVIE19):

AAPM Lung Challenge

AAPM

OK

http://aapmchallenges.cloudapp.net/competitions/35April 5,2019April 5,201956 individuals or teamsMay 31,2019Yes

Conversation with organizer ongoing. Organizer processes data on his end; use of Medici somewhat limited

User can no longer submit; data is being evaluated


AAPM Head/Neck Challenge

AAPM RT-MAC Challenge

AAPM

OK

http://aapmchallenges.cloudapp.net/competitions/34April 16, 2019

Pre-AAPM

June 7, 2019

AAPM Live Challenge

July 15, 2019

58 individuals or teams
See description of challenge for details / phases

Competition to start on April 15.


MICCAI Brain Tumor challenge

MICCAI

  1. URL not working
  2. and 3. are working

https://cpm2019.nci.nih.gov/

http://miccai2019.eastus.cloudapp.azure.com/

http://miccai2019.eastus.cloudapp.azure.com/competitions/2

June

Test phase has ended on 9/18/2019.


Max 5 submissions per account (can be a team or an individual)

Competition was officially accepted for the MICCAI conference.

Top participants will go to MICCAI.

2020/01/23

First link was within NCI, first and second URL are duplicates. NCI instance has been taken down.

QIN Breast Challenge

Paul Kinahan University of Washington = challenge organizer

Awaiting responses from him to be able to setup page/competition






Release dates currently pending from the organizers.

Organized with Keyvan Farahani


Potential challenges:

Name of ChallengeOrganization / MeetingMedici instance
used

Release
Training data

Release
Test data
Number of
Participants
Closing DateWill the challengeremainopen?Comments
MRI deidentification for NF event

Robert Allaway from Sage Bionetworks and Wenli Cai from MGH.


na

nanananana

A Hackathon for the NF Conference. The hackathon is a competition to NF volumetric image analysis, which is a three days event for participants to compete for the solutions to some clinical challenges to NF imaging.

MICCAI 2020






MICCAI has approved it
QIN PET-FDG






blanket approval

Discussion items


TimeItemWhoNotes

Action Items

Unknown User (bearceben) June monthly status report


Monthly status reports
Include MICCAI 2020 work and meetings, include NCI Imaging Informatics webinar preparation and presentation (June report)

Contract / invoice status

The May invoice received.


PIV card / GFE laptop / VPN

On hold.



MICCAI 2020 status

The validation phase started on July 9, 2020.  About 30 registrations. The challenge organizers and the test users have been subtracted. (7/9/2020)




Videos
  • data submission
  • code submission
  • docker submission (data + code)

Other challenges

older still open challenges

In the next few weeks, Medici might be used by MGH for challenges. It might be a separate effort.


Reopening old challenges
Funding was provided with the contract. Who is going to decide which challenges should be re-opened? How is this going to happen? How are we going to publicize this?

URLs

Strategy meeting
  • review paper
  • open challenges back up (contract / funding)
  • website

Incoming help desk requests


Other work
  • testing of new version of CodaLab
  • Docker submission improvements

Action items