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Date

Attendees

NameAttended
Jayashree Kalpathy-Cramer
Ulli WagnerYes
Carolyn KlingerYes
Benjamin BearceYes

Goals

  • Status Update for Medici Helpdesk

Currently supported challenges

Name of ChallengeOrganization / MeetingMedici instance
used

Release
Training data

Release
Test data
Number of
Participants
Closing DateWill the challenge remain open?Comments

Computed tomography ventilation imaging evaluation 2019 (CTVIE19):

AAPM Lung Challenge

AAPM

OK

http://aapmchallenges.cloudapp.net/competitions/35April 5,2019April 5,201956 individuals or teamsMay 31,2019Yes

Conversation with organizer ongoing. Organizer processes data on his end; use of Medici somewhat limited

User can no longer submit; data is being evaluated


AAPM Head/Neck Challenge

AAPM RT-MAC Challenge

AAPM

OK

http://aapmchallenges.cloudapp.net/competitions/34April 16, 2019

Pre-AAPM

June 7, 2019

AAPM Live Challenge

July 15, 2019

58 individuals or teams
See description of challenge for details / phases

Competition to start on April 15.


MICCAI Brain Tumor challenge

MICCAI

  1. URL not working
  2. and 3. are working

https://cpm2019.nci.nih.gov/

http://miccai2019.eastus.cloudapp.azure.com/

http://miccai2019.eastus.cloudapp.azure.com/competitions/2

June

Test phase has ended on 9/18/2019.


Max 5 submissions per account (can be a team or an individual)

Competition was officially accepted for the MICCAI conference.

Top participants will go to MICCAI.

2020/01/23

First link was within NCI, first and second URL are duplicates. NCI instance has been taken down.

QIN Breast Challenge

Paul Kinahan University of Washington = challenge organizer

Awaiting responses from him to be able to setup page/competition






Release dates currently pending from the organizers.

Organized with Keyvan Farahani


Potential challenges:

Name of ChallengeOrganization / MeetingMedici instance
used

Release
Training data

Release
Test data
Number of
Participants
Closing DateWill the challengeremainopen?Comments
MRI deidentification for NF event

Robert Allaway from Sage Bionetworks and Wenli Cai from MGH.


na

nanananana

A Hackathon for the NF Conference. The hackathon is a competition to NF volumetric image analysis, which is a three days event for participants to compete for the solutions to some clinical challenges to NF imaging.

MICCAI 2020






MICCAI has approved it
QIN PET-FDG






blanket approval

Discussion items


TimeItemWhoNotes

Action Items



New challenge
BMMR2: Breast Multiparametric MRI for prediction of NAC Response (Organizer David Newitt, UCSF)

Contract
contract mod will go out

Monthly status reports
OK

Contract / invoice status

The June invoice received. 


PIV card / GFE laptop / VPN

On hold.



JIRA
  • Is the JIRA access working?

MICCAI 2020 status

Short paper submission is done. The site showed multiple submissions per group, but those were failed submissions.

The team discussed how to present during the virtual conference.

The test phase is going to end tonight. The Docker images will be submitted over the next week and a half. Ben and Keyvan will then run the Docker images.

Ben is to confirm with Tahsin and Spyros that participants should submit Docker images to a specific repository.



Paper
The draft will be submitted by September 15, 2020. - Not received

Videos
  • data submission
  • code submission
  • docker submission (data + code)

Other challenges
  • QIN UCSF
  • Dave Fuller and MGH team.
  • Maybe the COVID challenge.

older still open challenges

In the next few weeks, Medici might be used by MGH for challenges. It might be a separate effort.


Reopening old challenges

Funding was provided with the contract.

Find out if folks have used the older challenges before deciding on more challenges.





Strategy meeting
  • review paper
  • open challenges back up (contract / funding)
  • website

Incoming help desk requests


Other work
  • testing of new version of CodaLab
  • Docker submission improvements

Action items