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Date

Attendees

NameAttended
Jayashree Kalpathy-Cramer
Ulli WagnerYes
Carolyn KlingerYes
Benjamin BearceYes

Goals

  • Status Update for Medici Helpdesk

Currently supported challenges

Name of ChallengeOrganization / MeetingMedici instance
used

Release
Training data

Release
Test data
Number of
Participants
Closing DateWill the challenge remain open?Comments

Computed tomography ventilation imaging evaluation 2019 (CTVIE19):

AAPM Lung Challenge

AAPM

OK

http://aapmchallenges.cloudapp.net/competitions/35April 5,2019April 5,201956 individuals or teamsMay 31,2019Yes

Conversation with organizer ongoing. Organizer processes data on his end; use of Medici somewhat limited

User can no longer submit; data is being evaluated


AAPM Head/Neck Challenge

AAPM RT-MAC Challenge

AAPM

OK

http://aapmchallenges.cloudapp.net/competitions/34April 16, 2019

Pre-AAPM

June 7, 2019

AAPM Live Challenge

July 15, 2019

58 individuals or teams
See description of challenge for details / phases

Competition to start on April 15.


MICCAI Brain Tumor challenge

MICCAI

  1. URL not working
  2. and 3. are working

https://cpm2019.nci.nih.gov/

http://miccai2019.eastus.cloudapp.azure.com/

http://miccai2019.eastus.cloudapp.azure.com/competitions/2

June

Test phase has ended on 9/18/2019.


Max 5 submissions per account (can be a team or an individual)

Competition was officially accepted for the MICCAI conference.

Top participants will go to MICCAI.

2020/01/23

First link was within NCI, first and second URL are duplicates. NCI instance has been taken down.

QIN Breast Challenge

Paul Kinahan University of Washington = challenge organizer

Awaiting responses from him to be able to setup page/competition






Release dates currently pending from the organizers.

Organized with Keyvan Farahani


Potential challenges:

Name of ChallengeOrganization / MeetingMedici instance
used

Release
Training data

Release
Test data
Number of
Participants
Closing DateWill the challengeremainopen?Comments
MRI deidentification for NF event

Robert Allaway from Sage Bionetworks and Wenli Cai from MGH.


na

nanananana

A Hackathon for the NF Conference. The hackathon is a competition to NF volumetric image analysis, which is a three days event for participants to compete for the solutions to some clinical challenges to NF imaging.

QIN PET-FDG






blanket approval

Discussion items


TimeItemWhoNotes

Action Items
  • Review monthly status reports for September and October.

New challenge

BMMR2: Breast Multiparametric MRI for prediction of NAC Response (Organizer David Newitt, UCSF)

  • Information from TCIA team: as of  UCSF had not sent the majority of the data to TCIA for curation. Curation will take a few weeks
  • What does this mean for the timeline of this challenge?
  • Last update from David Newitt received on 10/06/2020

AAPM SPIE Challenge
uses Medici, sent email to challenge organizer, Keyvan, Justin, Jayashree

Monthly status reports
see above

Contract / invoice status / SOW

The June invoice received. Need July and August to close out the contract year ending 8/30/2020.

Submit cloud service invoices with the invoices for labor costs (needs to be handled at MGH).

Review of SOW - November 16, 2020, at 11:30 am


PIV card / GFE laptop / VPN

Fingerprinted, security training - 1/2 done,



JIRA
  • Is JIRA access working?
    • requested JIRA access for Ben's Gmail account
  • MEDIC-2 - Getting issue details... STATUS   The issue is on hold until the other project is finished
  • MEDIC-1 - Getting issue details... STATUS   Ben decided to do the PDF creation manually.

Paper
The draft will be submitted by September 15, 2020. - Not received

Videos
  • data submission
  • code submission
  • docker submission (data + code)
    • Carolyn will start working on the Docker submission video. Review script and videos.

Other challenges
  • QIN UCSF - BMMR2
  • COVID challenge (Randy Gollub, Jayashree Kalpathy-Cramer)

older still open challenges

In the next few weeks, Medici might be used by MGH for challenges. It might be a separate effort.






Reopening old challenges

Funding was provided with the contract.

Find out if folks have used the older challenges before deciding on more challenges.





Strategy meeting
  • review paper
  • open challenges back up (contract / funding)
  • website

Action items