Date
Attendees
| Name | Attended |
|---|---|
| Jayashree Kalpathy-Cramer | Yes |
| Ulli Wagner | Yes |
| Carolyn Klinger | Yes |
| Benjamin Bearce | Yes |
Currently supported challenges
| Name of Challenge | Organization / Meeting | Medici instance used | Release | Release Validation data | Release Test data | Number of Participants | Closing Date | Will the challenge remain open? | Comments |
|---|---|---|---|---|---|---|---|---|---|
SPIE-AAPM-NCI DAIR Digital Breast Tomosynthesis Lesion Detection Challenge (DBTex) | http://spie-aapm-nci-dair.westus2.cloudapp.azure.com/competitions/4 |
| 1/4/2021 | 1/15/2021 | 132 registrants 9 submissions | 1/25/2021 | Challenge completed. The validation phase remains open. | ||
| Deep-learning for inverse problems: sparse-view X-ray Computed Tomography image reconstruction | Emil Sidky (UChicago) | Here's a link for the Challenge description/rules/timeline: https://www.dropbox.com/s/ciqqbal4xlxcn8x/DL-sparse-view-CT-challenge.docx?dl=0 Related to AAPM Annual meeting in July | 3/17/2021 | March 31, 2021 | May 17, 2021 | 123 registrants | 5/31/2021 | 2021/04/01 In validation phase Ben & Emil are testing Data are on an FTP server. Ben set up an Azure container to download the data for two participants. |
Tasks / Deliverables
| Task | Due Date | Deliverable | Status | |
|---|---|---|---|---|
Support of at least new two challenges
| 8/30/2021 |
| ||
Reopen three previously executed challenges
| 8/30/2021 |
Ben to investigate how to reopen the challenges e.g. by adding a new phase Discuss with Jayashree which challenges to reopen, reach out to MICCAI organization group to ask if they would be ok to reopen. Verify that users can create accounts Are the images still available? Start with one challenge. | ||
| Maintain and update the website | 8/30/2021 | |||
| 8/30/2021 | Investigate Google analytics plug-in - DONE (2021/04/01) | ||
| 8/30/2021 | |||
| Investigate the use of MedICI for federated learning challenges |
| Report | ||
| Investigate the integration of MedICI with Kheops |
| Report | Presentation: NCI Imaging Informatics Webinar The recordings are towards the bottom of the page. Draft: https://docs.google.com/document/d/1c20ny4UNWw4BTXhdFPmc3o0YG00toOndbklXhc40Rqc/edit | |
| Support the deployment of MedICI in NCI cloud environments | 8/30/2021 | App scan found vulnerabilities, Ben fixed them, app needs to be tested with test cases that are provided by Codalab, Ben needs to familiarize himself with the test suite. Codalab needs to be app scanned again. Codalab can connect to various storage places: Azure, AWS, GCP 2021/04/15 - NCI is hardening security which makes deployment much harder. NCI VMs are not allowed to talk to cloud environments. Kevin is investigating workarounds. The goal is to run an app scan. Keyvan suggested trying a Codalab deployment on Google cloud outside of the NCI network. Keyvan will investigate. |
Discussion items
| Time | Item | Who | Notes |
|---|---|---|---|
| Notes | AAPM part of MIDRC is planning to use Medici for challenges | ||
| Action Items | |||
| Upcoming challenges | BMMR2: Breast Multiparametric MRI for prediction of NAC Response (Organizer David Newitt, UCSF)
| ||
| Monthly status reports | add Monday NCI cloud email to the monthly status report | ||
| Contract / invoice status / SOW | July 2020 invoice received, can now close out the contract year ending 8/30/2020. September to November 2020 invoice has been received | ||
| PIV card / GFE laptop / VPN | VPN access | ||
| Paper | The draft will be submitted by September 15, 2020. - Not received | ||
| Videos |
| ||
| Strategy meeting |
|
