Date
Attendees
Agenda
- Data Release
- Korea gastric cancer dataset released - 04-16-2020
- Announced through PDC mailing list - listserv
- Release notes posted
- Ongoing work
- Simplified study identifiers and external references
- Format: PDC000001
- Accessible via url
- Search by id (both external and internal)
- Old: https://pdc.cancer.gov/pdc/study/be2883cb-57b8-11e8-b07a-00a098d917f8
- New: https://pdc.cancer.gov/pdc/study/PDC000001
- Support
- Clustergram tutorial video
- Portal and workspace related improvements
- Workspace usability improvement
- Ability to add labels/annotations to files during upload time, that can later be used in the study creation
- Evaluate the new PRIDE format - Sample and Data Relationship Format (SDRF) - https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects
- Next data sets / releases in pipeline
- Korea Gastric Cancer (April) Released
- HNSCC from CPTAC3 (May)
- GDC and TCIA linking
- Study description
- Lung Cancer dataset of Academia Sinica - from ICPC, MacCoss - (Late May to early June)
- Initial review of the metadata done
- LSCC from CPTAC3 (July)
- PDA from CPTAC3
- APOLLO
- Georgetown lung dataset
- Other items
- PDC Advisory committee
- ASMS and AACR virtual conferences
- NIH Workshop on Cloud based interoperability
- External interactions
- SevenBridges + Univ of Michigan - Philosopher integration with SBG
- ISB-CGC - providing protein quant data through APIs
- PRIDE SDRF format
- CCDH
- Sam Payne
- NCI Updates
Discussion items
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