Date
Attendees
Henry Rodriguez, Chris Kinsinger, Erika Kim, John Otridge, Anand Basu, Rajesh, Deepak Signhai, Karen Ketchum, Mike MacCoss, Paul Rudnick, Michael Holck, Gilberto
Agenda
- Ongoing work
- Data release
- HNSCC from CPTAC3
- GDC and TCIA linking - received
- Study description and embargo date? - received
- Lung Cancer dataset of Academia Sinica - from ICPC, MacCoss
- Initial review of the metadata done
- Study IDs reserved and sent
- Release of Simplified study identifiers and external references - now in stage
- Identifiers.org
- Support
- Clustergram tutorial video
- Portal and workspace related improvements
- Workspace usability improvement
- Ability to add labels/annotations to files during upload time, that can later be used in the study creation
- Next data sets / releases in pipeline
- HNSCC from CPTAC3 (May)
- Lung Cancer dataset of Academia Sinica - from ICPC, MacCoss - (Late May to early June)
- LSCC from CPTAC3 (July)
- PDA from CPTAC3
- LUAD confirmatory from CPTAC3
- APOLLO
- Georgetown lung dataset
- Organoid dataset from PNNL
- Other items
- PDC Advisory committee
- ASMS and AACR virtual conferences
- External interactions
- SevenBridges + Univ of Michigan - Philosopher integration with SBG
- ISB-CGC - providing protein quant data through APIs
- PRIDE SDRF format - Sample and Data Relationship Format (SDRF) - https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects
- Annotate a CPTAC dataset for PRIDE
- Evaluate the new PRIDE format -
- CCDH
- Sam Payne
- NCI Updates
Discussion items
Time | Item | Who | Notes |
---|---|---|---|