Date
Attendees
Rajesh, Anand, Chris Kinsinger, Deepak Singhai, Erika, Gilberto Fragoso, Henry Rodriguez, John, Karen Ketchum, Michael Holck, Mike MacCoss
Agenda
- Ongoing work
- Data release - production deployment later today
- HNSCC from CPTAC3
- Lung Cancer dataset of Academia Sinica - from ICPC, MacCoss
- Release of Simplified study identifiers and external references - now in stage
- Support
- Clustergram tutorial video
- Portal and workspace related improvements
- Workspace usability improvement
- Next data sets / releases in pipeline
- LSCC from CPTAC3 (July)
- PDA from CPTAC3
- LUAD confirmatory from CPTAC3
- APOLLO
- Georgetown lung dataset
- Organoid dataset from PNNL
- Other items
- PDC Advisory committee
- ASMS and AACR virtual conferences
- External interactions
- SevenBridges + Univ of Michigan - Philosopher integration with SBG
- ISB-CGC - providing protein quant data through APIs
- PRIDE SDRF format - Sample and Data Relationship Format (SDRF) - https://github.com/bigbio/proteomics-metadata-standard/tree/master/annotated-projects
- Annotate a CPTAC dataset for PRIDE
- Evaluate the new PRIDE format -
- CCDH
- Sam Payne
- Identifier.org
- FAIRsharing.org
- NCI Updates
- New schedule for NCI-PDC call - move to a bi-weekly meeting
- Update of ongoing PDC development
- Release - May 13
- New data released - CPTAC3 HNSCC and Academia Sinica LUAD
- New PDC identifiers
- discussion on composition of Advisory committee
- Input/Feedback from stakeholders
Discussion items
Time | Item | Who | Notes |
---|---|---|---|
Data release | Rajesh |
| |
Advisory Board | Mike MacCoss |
| |
External Interactions | Rajesh | Share more about Philopher, ISB, PRIDE next call. Henry wants interaction plan/schedule with external folks. John will schedule call with Rajesh - need to discuss timing and how it fits within the rest of CRDC. Erika/Rajesh/John will have call. Erika wants concrete milestones defined for external interactions. | |
Sarah Gosling - looking to build tools for PDC workspace. Chris heard from her. | |||
Henry expects Daily Stats from the portal. John suggests page views on agenda and overlay milestone events (data release, email blast, conference). Added as agenda item to above call with Erika/Rajesh/John. | |||
Henry asks how much we should be storing non-cancer proteomic data. Open discussion question. Chris suggests it be more open to data other than cancer. |