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Date

Attendees


Goals

  •  

Discussion items

TimeItemWhoNotes

 
  • Recent Releases:
  • Data:
    • CPTAC Public data migration
      • Updates to CPTAC2 BRCA studies – a new versions
      • CPTAC2- Phase II Compref studies (S017, S018, S021) – planned for this week.
      • CPTAC3- NCI Cell Line (S041) - planned for this week
         
  • Features:
    • A new versioning feature is introduced to accommodate some scenarios of change requested by submitters after the initial release of the data.


  • Other:
    • Seven Bridges CGC Proteomics virtual Workshop was conducted successfully.
    • There were 66 registrants and 19 participants attended the hands-on session (excluding SB, NCI/PDC teams)
    • Interactive session with questions 
    • Recording and slides are available in the CGC website: 

https://www.cancergenomicscloud.org/events/2021/4/21/proteomics-virtual-workshop


  • April Metrics: 
  • Ongoing and Planned Activities:
    • CPTAC Public Data Migration – (29 studies left)
      • Legacy studies
      • Phase II Compref studies (CPTAC study ids: S017, S018, S021)
    • A dedicated publication page that lists all publications - displays the abstract, all related PDC studies, and publication related supplementary material.
    • A dedicated heatmap page to simply navigation to CDAP quantitation data
    • PDC-Firecloud/Terra interoperability through PFB url handoff
    • Developing a strategy to integrate toolkit from Payne Lab.
    • Updating the GCT files for the heatmaps to include additional clinical metadata.
    • Working on a best practice write up for CDAP quant data for helping ISB team.

Rajesh                                                                                                                                                                                                                                                                                                    










Paul




Erika



























Erika shared with the group more about the ProteomeXchange Consortium and the group discussed the pros/cons of becoming a member. She would like to have Paul/Rajesh attend the next meeting to understand their Data set/ Metadata.  










Action items

  • Sudha to schedule time with Paul and team to walk through the CDAP process.