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In a project as highly collaborative as caArray, frequent and open communication among all stakeholders is critical to success. In order to communicate with the broadest group possible about the status and direction of caArray project, we have decided to move the content of our monthly caArray User meetings to the caBIG® Integrative Cancer Research (ICR) Workspace meetings. These meetings are currently held twice a month, 2:00-4:00pm ET, on the second and fourth Wednesdays of the month. A caArray update will be on the agenda about every other month. We hope the community will use these opportunities to learn about upcoming releases of caArray, to learn new features implemented in caArray, and to provide feedback on experiences.

The agenda for the meetings in which caArray will be discussed will be sent to the caArray Users listserv and posted to the caArray Users forum a few days prior to the meetings. In addition, you are welcome to join the ICR Workspace listserv.

The ICR Workspace Meeting information is the following:

800-593-0616, passcode 2927756
Adobe connect session: http://cbiit.acrobat.com/icrws

On this page we will post the slides for each caArray user meeting. Please use the caArray forum if you have any question or comment.

  • Agenda for October 12, 2011
    • Sherri Decoronado (no slides) spoke about the NCI Provocative Questions. This is a list of important but non-obvious questions that will stimulate the NCI’s research communities to use laboratory, clinical, and population sciences in especially effective and imaginative ways.
    • Zhong Li highlighted the new Molecular Analysis Tools Knowledge Center wiki which provides centralized, authoritative repository of knowledge, information, and web-based support to facilitate the deployment and ongoing development of caBIG® tools, standards, and infrastructure in the molecular analysis domain. Tools supported are caArray, caIntegrator, GenePattern and geWorkbench.
    • Rashmi Srinivasa provided an update on caArray, the array data management system.
    • Michael Reich (slides on request efreund@3rdmill.com) presented GenomeSpace, a community space for creating and sharing genomic analysis tools (It is seeded with with six popular genomics tools (Cytoscape, Galaxy, GenePattern, Genomica, Integrative Genomics Viewer (IGV), and the UCSC Browser).
  • Agenda for May 11, 2011
    • 2:00 General Info
    • 2:10 - caArray Users Meeting – Rashmi Srinivasa
    • 2:40 – Jackson Laboratory Implementation Update – Grace Stafford
    • 3:00 – Demonstration of Using caBIG® Workflows in Galaxy – Ravi Madduri
    • 3:30 Meeting close
  • Agenda for February 9, 2011
    • 2:00 General Info
      • Agenda review
      • Action items
      • Announcements
    • Presentations –
    • 3:00 - Meeting close
  • Agenda for October 13, 2010
    • 2:00 General Info
      • Agenda review
      • Action items
      • Announcements
    • Presentations –
    • 3:45 - Meeting close
  • Agenda for August 11, 2010
    • 2:00 Opening announcements
    • Presentations –
      • 2:05 – Using NCIt and NCImt – Liz Hahn-Dantona
      • 2:30 – Making 508 Compliant Presentations
      • 3:00 – caArray Users Meeting
        • Overview of caArray
        • caArray 2.4.0 - upcoming release
        • caArray 2.5.0 - next major release
        • Avenues for feedback
    • 4:00 - Meeting close
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