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Retired

The NCI instance of the caIntegrator database is now retired. For details about the retirement, see the caIntegrator Retirement Announcement.

Contents of this Page
At a Glance Details
  • Version Number and Release Date: 1.4.3 May 2014
  • Primary audience: Researchers and bioinformaticians
  • Installation Level: Intermediate - technical assistance may be required, download may require supporting infrastructure or software
  • System Requirements: Refer to the System Requirements section.

Tool Overview

caIntegrator logo caIntegrator is a web-based software application that allows researchers to set up custom web portals to conduct integrative research, with no  programming experience required. These portals bring together heterogeneous clinical, microarray and medical imaging data to enrich multidisciplinary research.

Using caIntegrator, researchers can execute, save and share queries to identify and collect many types of data, combining clinical information with genetic and genomic data to enable multidimensional analysis.

caIntegrator uses caGrid analytical services such as GenePattern and BioConductor to perform analysis on the integrated study data, including clinical survival data. caIntegrator leverages the Cancer Data Standards Registry and Repository (caDSR) to map experimental data to well-defined datatypes and uses caGrid and Java client APIs to access data from applications such as caArray and the National Biomedical Imaging Archive (NBIA). caIntegrator is also integrated with caBIO to perform queries on genes and pathways. caIntegrator has visualization capabilities for copyNumber and Expression data. It integrates well with Heatmap viewer and Integrative Genomics Viewer (IGV).

Installation and Downloads

Downloads and Installation Instructions

Version 1.4.3

Version 1.4.2

Version 1.4

System Requirements

caIntegrator is an open-source, web-based J2EE Java application employing Spring, Struts 2 and Hibernate technologies. Full installation requires installation of JBoss 4.0.5; MySQL 5.0.45; ANT (Apache); JDK 1.5.

GitHub Repositories

Support for caIntegrator

You can contact the NCI CBIIT Application Support if you have any questions or concerns.

Documentation

Refer to caIntegrator Documentation.

What's New

caIntegrator Knowledge Base

Open-source Development

Link to caIntegrator Open Development Code Base Exit Disclaimer logo

Integration with Other Tools - caArray

caIntegrator currently only works with caArray 2.3.x and 2.4.x. Therefore, please make sure that the version of the caArray instance from which caInt2 retrieves data from is 2.3.0 and above.

 

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