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  • Advertise (email/chat) the server is going to be shut down
  • Clean up Pre-Merged, and Pre-Reitred concepts.
  • Remote login to the host computer using Reflection X
  • Shut down Protege server
  • Shut down Explanation server.
  • Start Protege client
  • Connect to database project by following the path:  /app/protege/data/BiomedGT.pprj
  • Enable PromptTab in menu (in Project->Configuration dialog)
  • Compare against previous baseline file/database project (pprj file)
  • Accept/reject changes
  • Save concept_history (in "save" icon in Table View)
  • Disable PromptTab (in Configuration dialog)
  • Adjust baseline version in Metadata tab
  • In the Protégé GUI menu, click 'Change' , 'Clean up Changes Ontology'.  Ensure that 'Delete Changes' and 'Archive Changes' remain checked.  Click 'OK'. After the process has been completed, click 'Change' , 'Save Changes Ontology'
  • Export file for next Prompt comparison or publication
    • Convert Project to Format -> OWL / RDF Files
      • This creates a new project .pprj and associated OWL file, give it a name with a date suffix, example BiomedGTFile-071128.pprj.
  • Close project without saving, and exit the client.
  • In the Reflection X console, navigate to /app/protege/data/ and look for any BiomedGT accept files:  (BiomedGT-accept.pprj,  .pjrn, .rdf, .rdfs)  and remove them from the directory by typing  'rm BiomedGT-accept.pprj' and so on for the other  files. 
  • Start Explanation server (always restart explanation server first before the Protégé Server).
  • For Production tier at the end of the month

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  • monthi)    Reopen Protégé client.
    ii)   Click 'Project', 'Configure', enable 'OWLClasses Tab'
    iii)  Click 'Reasoning', 'Classify Taxonomy'
    iv)  Save the Inferred Ontolgoy using the save button in the Inferred Hierarchy section. Give the naming convention 'BiomedGT-Inferred-YYMMDD.owl'

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  • * Startup Protege server.
  • Verify Protege server is up.
  • Verify Explanation tab communicates with Explanation server.
  • Exit remote program.
  • Advertise that the server is back up.
  • For end-of-the-month publications, after performing a prompt, notify Tracy, John, or Rob of the availability of the new baseline.
  • In the notification include:  (info) the filename of the baseline and (ii) the length of time for the Prompt/export to file to complete.
  • The raw exports (OWL files only) will be archived in the private FTP site, and the processed exports in the anonymous FTP site. This  will help keep the Protégé server clean and organized.

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