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caNanoLab General

What is caNanoLab?

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Introduction
Introduction

Additional information on caNanoLab is available on the caNanoLab Wiki Home page.

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How do I register for a caNanoLab login account?

 If you do not have a caNanoLab account and want to submit items, you must register first. Please contact Application Support. You will be assigned a user role which affects what actions you can perform in caNanoLab. caNanoLab validates your login and alerts you if you have used an incorrect user name or password.

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How do I reset my password if I have forgotten it?

To update your caNanoLab password, please contact Application Support.

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LoginAccount
LoginAccount
How do I obtain a caNanoLab user account to login?

To register for a login account, contact Application Support (ncicbiit@mail.nih.gov).

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Developer
Developer
Who developed caNanoLab?

caNanoLab was developed as a collaboration between the NCI CSSI Office of Cancer Nanotechnology Research and the NCI Center for Biomedical Informatics and Information Technology (CBIIT), the NCI Nanotechnology Characterization Laboratory (NCL), and the NCI Cancer Centers of Nanotechnology Excellence (CCNEs).

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Does caNanoLab leverage any existing standards for describing nanoparticles and associated characterizations?

Standards supporting nanotechnology in the biomedical domain are emerging and under continuous development. caNanoLab leverages and extends concepts from existing standards developed by the biomedical and nanotechnology community. caNanoLab leverages biomedical and nanotechnology concepts from the NCI's Enterprise Vocabulary Services (EVS) and the Nanoparticle Ontology (NPO)

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developed by Washington University. The caNanoLab team works with the biomedical nanotechnology community to identify and define concepts identified during use case analysis. New concepts are maintained in the NCI Thesaurus.

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Definitions
Definitions
Where can I find definitions for caNanoLab concepts?

Definitions to caNanoLab concepts are available in the caNanoLab User's Guide, caNanoLab glossary, and the NCI Thesaurus.

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caNanoLab is available for download via the caNanoLab Wiki, in the Installations and Downloads section along with the Installation Guide and Release Note. The installation guide specifies general system requirements and instructions for installing the web application and database. All supporting documentation is available via the caNanoLab Wiki, Documentation and Training section.

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DataSharing
DataSharing
How do I incorporate caNanoLab into a data sharing plan?

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caNanoLab provides secure access to data and requires authentication and authorization for access to non-public data.

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Submitting
Submitting

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create and save data

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in caNanoLab?

In order to submit data into save a protocol, sample, or publication in caNanoLab, a user you must have an account belonging to the data curator Data Curator group.   Users can To register for a login account by selecting this option under “User Actions” on the caNanoLab homepage (https://cananolab.nci., contact Application Support (ncicbiit@mail.nih.gov). Once a user has the appropriate you have an account, the user can login to you can log into caNanoLab (https://cananolab.nci.nih.gov)  and submit samples and associated characterizations, protocols, and publicationsand create an item and assign access to users and collaboration groups. If you are a Data Curator, you can make the item publicly-accessible. If not, you must submit the item for review, and when the Data Curator approves the item, it will be public.

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To assist in the data submission this process, a caNanoLab Data Submission Video and accompanying transcript are available, as well as the caNanoLab User's Guide.

caNanoLab data submission workflowcaNanoLab composition and characterization concepts

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What types of data can I submit into caNanoLab?

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In addition to associating samples with publication information stored in the the caNanoLab Data Portal, caNanoLab has established a direct reciprocal link between datasets and associated research articles published by Elsevier.  The current list of Elsevier journals that offer reciprocal linking as well as the future list are available on the caNanoLab Integration with Elsevier web page.

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Who can I contact to

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save data into caNanoLab?

A data curator is available to assist in curating data from nanotechnology characterizations in biomedicine. Data curation activities on caNanoLab are currently performed by nanotechnology data scientists at Washington University and the Nanotechnology Characterization Laboratory (NCL). Data curators assist in extracting data from publications and nanotechnology experiments, annotating extracted data, and providing overall data quality control.

If you are interested in depositing your data into caNanoLab, please contact NCI CBIIT App Support: Application Support Telephone: 240-276-5541 or toll free: 888-478-4423 Email: ncicbiit@mail.nih.gov

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What is a caNanoLab site?

A caNanoLab site is an organization that maintains an instance of caNanoLab and participates in the sharing of data in a federated approach across the caBIG grid. caNanoLab search facilities allow users to retrieve publicly available data from diverse sites by selecting the site(s) when performing a caNanoLab search.

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caNanoLab User's Guide| caNanoLab Home Page | caNanoLab Release Notes

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