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When you click the Protocols menu, the Manage Protocol page appears with the following options.
You can also perform the following functions with a protocol.
Description of a Protocol
During a caNanoLab workflow, you can identify a protocol used in creating or annotating a sample. A protocol provides clear and detailed documentation about the precise actions taken in any procedure that might be part of an experiment. For example, a protocol could describe the steps a laboratory used for characterizing samples. There are different type of protocols, such as Physical, In Vitro, and In Vivo.
With every protocol object you create in caNanoLab, you can define its visibility, in other words, its access to other users of caNanoLab. For more information about visibility options, see the tables corresponding to each characterization type.
When you click the Protocols menu, the Manage Protocol page appears with the following options.
You can also perform the following functions with a protocol.
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Click the Protocols caNanoLab menu option.
On the Manage Protocols page, click Create a New Protocol. This opens the Create Protocol page.
The following table lists and describes the fields on the Create Protocol page. Enter and select the appropriate information as needed. Items with an asterisk are required.
Name Description Protocol Type*
Include Page Protocol type Protocol type Include Page Other options Other options Protocol Name*
Enter or select from the drop-down list the protocol name (required).
Protocol Abbreviation
Enter a shortened phrase used in place of the protocol name.
Protocol Version
Enter or select from the drop-down list the protocol version number.
Upload
OR
Enter File URLClick the Browse button to navigate to the protocol to be associated with the protocol, or enter the URL where the protocol is located.
File Title
Enter the title of the protocol file.
Description
Enter any additional description information that the form does not include.
Access to the Protocol For more information about sharing, see Sharing a Protocol with a User or Group or Making the Protocol Public.
Include Page Adding access include Adding access include To clear the entries and start again, click Reset
When you finish defining the protocol, click Save.
Info title My Workspace Once you save a protocol, it is listed on the My Workspace page where you can manage all of your submitted protocols, and view any protocols that a user has shared with you.
Once you save the protocol, the Update Protocol page opens. With the appropriate security permissions you can
Update the protocol information.
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The Update Protocol page enables you to update protocol information and update access to the protocol.
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Once data is made Public, you can update the data, but it will be retracted from Public, and you will need to resubmit it to the curator again for review. |
The following table lists and describes the fields. An asterisk indicates a required field.Â
Update Sample | Description | ||||||||||||
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Protocol Type* |
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Protocol Name* | Enter or select from the drop-down list the protocol name (required). | ||||||||||||
Protocol Abbreviation | Enter a shortened phrase used in place of the protocol name. | ||||||||||||
Protocol Version | Enter or select from the drop-down list the protocol version number. | ||||||||||||
Upload OR Enter File URL | Click Browse to navigate to the protocol to be associated with the protocol, or enter the URL where the protocol is located. | ||||||||||||
File Title | The title of the protocol file. | ||||||||||||
Description | Enter any additional description information that the form does not include. | ||||||||||||
Access to the Protocol | For more information, see Sharing a Protocol with a User or Group or Making the Protocol Public.
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Click Update when you are done editing the Protocol. To disregard the changes, click Reset.
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Sample Search Results Columns | Description | ||||||||||||
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Action | Click View in the first column to display the protocol in a PDF file.
Click + Add to Favorites to add a bookmark for the protocol on your My Favorites tab. Added to Favorites appears in the column when the protocol is successfully added. | ||||||||||||
Protocol Type |
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Protocol Name | Enter or select from the drop-down list the protocol name. | ||||||||||||
Protocol Version | Enter or select from the drop-down list the protocol version number. | ||||||||||||
Protocol Abbreviation | Enter a shortened phrase used in place of the protocol name. | ||||||||||||
Protocol File | The Title and Description of the protocol are listed. Click View to download the protocol file. The column is empty when there is no protocol file associated with the Protocol. | ||||||||||||
Created Date | Indicates the date on which the protocol was added. |
Additional Protocol Tasks
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Once data is made Public, you can update the data, but it will be retracted from Public, and you will need to resubmit it to the curator again for review. |
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The Protocol Update page opens when you click the Edit link corresponding to a protocol listed in Protocol Search Results. The page displays all of the information for a protocol entered when the protocol was created in caNanoLab (Creating a Protocol). With appropriate permissions, you can edit the title, description, and access of a protocol in this dialog box.
The following table lists and describes the fields. An asterisk indicates a required field. Click Update when you are done editing the Protocol. To disregard the changes, click Reset.
Update Sample | Description | Protocol Type* | |
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Include Page | Protocol type | Protocol type | |
Include Page | Other options | Other options | |
Protocol Name* | Enter or select from the drop-down list the protocol name. | ||
Protocol Abbreviation | Enter a shortened phrase used in place of the protocol name. | ||
Protocol Version | Enter or select from the drop-down list the protocol version number. | ||
Upload OR Enter File URL | Click Browse to navigate to the protocol to be associated with the protocol, or enter the URL where the protocol is located. | ||
File Title | The title of the protocol file. | ||
Description | Enter any additional description information that the form does not include. | ||
Access to the Protocol | For more information, see Sharing a Protocol with a User or Group or Making the Protocol Public. Include Page | | Adding access include | Adding access include
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This action deletes the protocol from the caNanoLab database, executed behind the scenes at a scheduled time. |
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