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December Face-to-Face (December 5 - December 7, 2017)

Meeting Details

NCI Shady Grove Campus
9609 Medical Center Drive
Rockville, MD 20850
http://www.cancer.gov/about-nci/visit

Rooms:

Conference Details

Phone:

WebEx:

Day 1

Day 2

Day3

Attendees

...

De Coronado, Sherri    

...

Safran, Tracy

...

Kuntipuram, Kumar

...

Tuesday, December 5

4-W-034           8:00-12:00

5-W-032         12:30-  5:00

Wednesday, December 6

3-W-030           8:00-10:30 (gap 10:30-12:00)

3-W-030           1:00-  5:00

Thursday, December 7

1-E-030             8:00-11:00 (gap 11:00-12:00)

3-W-030            12:00-  1:00

5-E-030             1:00-  5:00


Conference Details

Remote Dial-In (all 3 days): 1-866-660-5416 # 2398515

WebEx:

Tuesday, December 5


Wednesday, December 6


Thursday, December 7

References

Agenda

 

  

Tuesday, December 5

  
TimeLocationTopicsParticipantsResources
9:00 AM - 10:00 AM4-W-034

EVS Status and Future Direction

Discuss EVS current state, trends, and future directions

  • Larry to give brief overview of EVS infrastructure, resources, and services, to help frame
  • Group discussion of future possible directions and priorities.
Broad cross-EVS participationEVS Project Architecture
11:00 AM - 12:00 AM4-W-034

EVS Project Architecture

EVS Project Architecture Review and Update

  • Review overall architecture and provide updates
Broad cross-EVS participationEVS Project Architecture
Noon - 1:00 PM Lunch  
1:00 PM - 2:00 PM5-W-032

User Group Discussion - caDSR

User Teams to share how they are using EVS and  discuss requirements/priorities for the future.

  • APIs: Java, REST (CTS2 or 3-store), SPARQL, FTP
  • Backwards compatibility of server/client/data releases
  • Incl: Java/jar file issues and future
  • Incl: New terminology server API/content/other needs.
caDSR contact - Denise, Philippa, developers 
2:00 PM - 3:00 PM5-W-032

User Group Discussion - FDA and CDISC

 

User Teams to share how they are using EVS and  discuss requirements/priorities for the future.

  • APIs: Java, REST (CTS2 or 3-store), SPARQL, FTP
  • Backwards compatibility of server/client/data releases
  • Incl: Java/jar file issues and future
  • Incl: New terminology server API/content/other needs.

Editors

Liz, Erin, Brenda

 
3:00 PM - 4:00 PM5-W-032

User Group Discussion - CTRP

User Teams to share how they are using EVS and  discuss requirements/priorities for the future.

  • APIs: Java, REST (CTS2 or 3-store), SPARQL, FTP
  • Backwards compatibility of server/client/data releases
  • Incl: Java/jar file issues and future
  • Incl: New terminology server API/content/other needs.
CTRP - Tiger team (Brian) 
  

Wednesday, December 6

 

References

Agenda

 

Tuesday, December 5 
   
TimeLocationTopics Resources
9:00 AM - 10:00 AM3-W-030

EVS Architecture

Discuss Potential of using a variety of architectures

Proposed topics for discussion:

  • Micro services
    • Considerations:
      • Determine how to synchronize data on the back-end. LexEVS DB and Triple Store need to be in sync when NCIt information (such as value sets) changes. 
   
    
    
Noon - 1:00 PM Lunch 
    
    
    
    
  

Wednesday, December 6

 
TimeLocationTopicsResources
    
    
Noon - 1:00 PM Lunch 
    
    
    
      • Determine the potential of a loader that relies on SPARQL queries (after SPARQL query load, kick off LexEVS loader)
  • LexEVS integration with EVS Triple Store
    • Considerations:
      • Determine use of triple store calls in parallel with LexEVS DB
      • Determine performance improvements over LexEVS DB
      • Determine what calls could be made to the triple store instead of LexEVS.
      • Determine use of Stardog built in graph database.
      • Determine performance considerations for hierarchy traversal for graph resolution.
  • Future implementation considerations

Gilberto Fragoso

Kim Ong

Tracy Safran

Rob Wynne

Larry Wright

Margaret Haber

Sherri De Coronado

Bron Kisler

Systems team

John Cambell /Ruth Monterio users of the SQARL

 
10:00 AM - 12:00 AM?

EVS Architecture - Technical Discussion with Systems team

Discuss technical aspects of potentially using a variety of architectures

Proposed topics for discussion:

  • Micro services
    • Considerations:
      • Embedded Tomcat implementations
      • Alternative web service platforms
      • Container/Port clashes
  • LexEVS integration with EVS Triple Store
    • Considerations:
      • SPARQL clients
      • Docker options
  • Future implementation considerations
    • Java
    • Python
    • Node.js/javascript
    • Others?

Systems team

 
Noon - 1:00 PM Lunch  

1:00 PM - 2:00 PM

3-W-030

EVS Project Group Discussion (During regular call-in time)

Proposed topics for discussion:

  • (High Level Overview) Discuss direct calls to NCIt for value sets
    • Performance
    • Workflow
    • API Implications
  • Discuss Mappings and cross-walking coding schemes

  •  SwissProt, ICD-0-3, and MED-RT as the successor of NDRFT
    • Associations from/to
    • Cross walking coding schemes
    • Loader considerations for Mesh, RxNorm

Kim Ong

Tracy Safran

Rob Wynne

Editor's Representative/Margaret Haber

Larry Wright

Sherri De Coronado

 
2:00 PM - 3:00 PM3-W-030

NCI Systems Discussions

Proposed topics for discussion:

  • Discuss CI and Docker Status/Roadmap
    • Discuss the current status of the Docker scripts used to build/test LexEVS components.
      • Discuss the current NCI Docker images used in LexEVS tests.
    • Discuss NCI's current status and future plans to use Docker.
  • Discuss Tech Stack Upgrades
    • Discuss DB upgrade: MySQL 5.6 vs. MariaDB
    • Discuss migrating from Anthill Pro to Jenkins

Jacob and Systems team

Gilberto Fragoso

Rob Wynne

Tracy Safran

Kim Ong

Larry Wright

Margaret Haber

Sherri De Coronado

Q/A (Sana)
    
  

Thursday, December 7

  
TimeLocationTopics Resources
9:00 AM - 12:00 PM

1-E-030 (9:00 - 11:00)

?

API Services

Proposed topics for discussion:

  • Overview of EVS REST API and future direction
    • Discuss what exists today.
    • Discuss future plans.
  • Overview of LexEVS provided API services and future direction
    • LexEVS API
    • LexEVS Remote API
    • LexEVS REST API (CTS2-based)
  • Discuss a new REST service
    • Discuss user requirements for a new REST API
      • Document the gaps from CTS2 REST API and user requirements.
      • Explore how simple searches and searches with an identifier and how this could replace most of the remote API.
    • Consider a new REST API to supplement CTS2 REST Services
      • Propose examination of current CTS2 REST API
      • Capture what doesn't work for the end users.
      • Review gap between Remote API and REST services.
    • Discuss surfacing terminology history in a REST service (NCIt and ULMS)
      • Determine what history information is required by the user to be returned.
        • Discuss surfacing history of value sets in a REST service
      • Discuss if this fits into LexEVS or is part of a new REST API

Kim Ong

Tracy Safran

Rob Wynne

End users such as CTRP, others

Larry Wright

Margaret Haber

Sherri De Coronado

 
Noon - 1:00 PM  Lunch     
    
1:00 PM - 3:00 PM5-E-030

Prioritization and debrief

Determine strategic direction and priorities

Kim Ong

Tracy Safran

Rob Wynne

Larry Wright

Margaret Haber

Sherri De Coronado