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  1. $R_HOME/bin/R
  2. At the R prompts:
    • source("http://www.bioconductor.org/biocLite.R")
    • biocLite()
    • biocLite("RCurl")
    • biocLite("SJava")
    • biocLite("RWebServices")
    • biocLite("RUnit")
    • biocLite("DNAcopy")
    • q()
  3. Build SJava links missed by install:
    • cd $R_HOME/lib64/R/library/SJava/libs
    • ln -s SJava.so libRInterpreter.so
    • ln -s SJava.so libSJava.so
  4. Build and test SJava/RWebServices installation (as per Bioconductor Installation Guide page 10)Need link
    • $R_HOME/bin/R
    • At the R prompts:
      • library(RWebServices)
      • unpackAntScript("/tmp/rservices")
      • q()
    • cd /tmp/rservices
    • ant recompile-sjava
    • ant basic-prop
      • Look for any errors)
    • ant rservices-test
      • This step is optional

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