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$R_HOME/bin/R
- At the R prompts:
source("http://www.bioconductor.org/biocLite.R")
biocLite()
biocLite("RCurl")
biocLite("SJava")
biocLite("RWebServices")
biocLite("RUnit")
biocLite("DNAcopy")
q()
- Build SJava links missed by install:
cd $R_HOME/lib64/R/library/SJava/libs
ln -s SJava.so libRInterpreter.so
ln -s SJava.so libSJava.so
- Build and test SJava/RWebServices installation, as described in Customizing and Deploying Web and Grid Services. Chris, even though I have created this link, I think it's confusing. On the one hand, you are saying to build and test the installation as described on the other page, but you are providing numbered lettered sub-steps here. Are they different from the other instructions. What are these steps for? The build and test sentence suggests these steps are to build and test... This comment applies to the other places on the page that link to these other instructions, (now on the new page). . This comm
$R_HOME/bin/R
- At the R prompts:
library(RWebServices)
unpackAntScript("/tmp/rservices")
q()
cd /tmp/rservices
ant recompile-sjava
ant basic-prop
- Look for any errors.
ant rservices-test
- This step is optional.
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