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Managing Sample Composition Annotations - 2021-06-24 | caNanoLab User's Guide - 2021-06-24| Managing Publications in caNanoLab - 2021-06-24

Tip
iconfalse
titleAccess to sample characterizations

If you have read-only permissions, see Access the Sample Characterization Summary. If you are a curator with appropriate security permissions, you can create, update, and delete characterizations.

...

Characterization NameProperties to Complete

Physical State

Select the Type of physical state.

Shape

  1. Select the Type of shape.

  2. Enter the shape Aspect Ratio.
  3. Enter the Minimum and Maximum Dimensions of the sample, and the units of measurement.

Solubility

  1. Select from the options or enter the name of the Solvent.
  2. Enter appropriate values for the Critical Concentration, then select the appropriate units for those values.
  3. Specify Yes or No to indicate whether the solvent Is Soluble?.

Surface

Specify Yes or No to indicate whether the surface Is Hydrophobic?.

...

  1. Add data values to Data and Conditions.
    1. To import a file of data values
      1. Save the spreadsheet of data values to a csv (comma-separated value) file.
      2. Click Import csv and select and follow the prompts to add the data file to the Findings Info.
        Import CSV button
      3. The columns and data are added to Data and Conditions.
    2. To add the data values manually
      1. Specify the number of columns and rows for the matrix, and click Update.
        Manually adding Data and Conditions data values
      2. Add the data values to the rows.

    Info

    Whether you imported or added information manually, you can preface each data value with one of the following: Maintain the default, equal to (=), or select greater than (>), less than (<), or infinity (approximate).
    Adding Data and Conditions values to the table

  2. To define a column, click an underlined column heading.
    Clicking column
    The Column Definition panel displays.
    Defining the Findings column definition
  3. Select a Column Type, Datum or Condition.

  4. Select a Column Name or select other and add a new one.

    Info
    titleColumn Notes
    You can add up to three cell viability Column Names, including cell viability, cell viability B, and cell viability C. You can further identify the column with the Column Value Type.


    1. For Column Type, Datum, the following characterization(s) display customized Column Name options.

      Characterization TypeColumn Type and Column Name Option(s)
      Physico-Chemical
      • Molecular – Molecular Weight
      • Purity – % purity for sample
      • Relaxivity – R1, R2, T1, T2
      • Size – PD1, Peak N , RMS size, Z Average
      • Surface – charge, zeta potential
      In Vitro

      Enzyme Induction – % of Control

      In VivoClick Other to name the column yourself.

    2. For Column Type, Condition, all characterizations provide the Column Name options in the left column of the following table. The Column Name autopopulates the Condition Property options in the right column.

      Column Type, Condition Autopopulates Column NameColumn Name Autopopulates
      Condition Property

      Centrifugation

      N/A

      Culture Media

      media type, serum percentage

      Electromagnetic Radiation

      bandwidth, frequency, time, wavelength

      Freeze Thaw

      N/A

      Long Term Storage

      lyophilized, time

      Lyophilization

      time

      pH

      N/A

      Sample concentration

      N/A

      Short Term Storage

      lyophilized, time

      Solvent Media

      ion concentration, ionic strength, molecular formula, osmolality, serum percentage, with serum

      Sonication

      number of pulses, pulse duration

      Temperature

      N/A

  5. To further identify a column, select a Column Value Type.

    Info
    Once the column information is saved, the Column Type is shown in parentheses after the Column Name, such as cell viability (mean).
  6. Select a Column Value Unit, or select other and add one.

  7. If you want the same value to fill all rows in a column, add a Constant Value.

    Info
    titleFor Column Value Type, boolean
    For Column Value Type, boolean, enter a Constant Value of 1 for true and 0 for false.

  8. Click Save, and the column(s) are updated.

    Info

    If needed, click Set Column Order to change the order of the column headings in the matrix.


  9. Click Save in the Finding section.

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TaskHow to

Printing Characterization(s)

To print the characterization(s), from the All tab characterization summary, click Print at the top right of the page.

Exporting Characterization(s) to a Spreadsheet

To export the characterization(s) to a spreadsheet, from the All tab characterization summary, click Export at the top right of the page.

Info

To export all sample information to JSON or XML, see Exporting Sample Information to JSON or XML

Editing a Characterization

  1. From the All tab's characterizations summary, click Edit at the right of the characterization section you want to change.
  2. The Characterization opens and you can edit it as needed.

Deleting a Characterization

Info
titleDeleting a characterization

This deletes a characterization(s) from the selected sample. If the characterization(s) was copied to other samples, the characterization is not removed from those samples.

To delete a characterization for a selected sample

  1. From the All tab's characterizations summary, click Edit at the right of a characterization section.
  2. The Characterization opens, and click Delete.
  3. The deleted characterization is placed in the sample archive for historical purposes.

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Managing Sample Composition Annotations - 2021-06-24 | caNanoLab User's Guide - 2021-06-24| Managing Publications in caNanoLab - 2021-06-24