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Saved on May 18, 2022

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changes.mady.by.user Unknown User (bearceba)

Saved on May 18, 2022

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Activities completed this month
MIDRC is up and running and challenge details are being ironed out: https://midrc-medici-competitions.eastus.cloudapp.azure.com/ CodaLab (Open Source Team): Federated learning challenge: Temp site is up to furnish challenge data: https://medici-codalab-main.eastus.cloudapp.azure.com/competitions/24 Their security scans said python2 and python3 have vulnerabilities. They are asking me to not use these libraries or delete the files from these libraries: True-CT Challenge There were some upload data issues where participants were getting permission denied when trying to sign into their sftp file shares. Otherwise things are good and we have pushed the phase to submit back to May 31st. DL-SPARSE Challenge We are in the validation phase and data for that phase has been updated: ground truth test set has been added to sftp server SIRPRISE Challenge There may be an email bug so working with Diane to iron that out. UPDATE: I believe we fixed this. Sometimes though CodaLab is blocked and emails are sent to spam. Not sure how to deal with that yet. Challenge is over on the 23rd due to supply issues of some chemicals.

Activities completed this month

MIDRC is up and running and challenge details are being ironed out: https://midrc-medici-competitions.eastus.cloudapp.azure.com/
CodaLab (Open Source Team):
Federated learning challenge:
- Temp site is up to furnish challenge data: https://medici-codalab-main.eastus.cloudapp.azure.com/competitions/24
- Their security scans said python2 and python3 have vulnerabilities. They are asking me to not use these libraries or delete the files from these libraries:
True-CT Challenge
- There were some upload data issues where participants were getting permission denied when trying to sign into their sftp file shares.
- Otherwise things are good and we have pushed the phase to submit back to May 31st.
DL-SPARSE Challenge
- We are in the validation phase and data for that phase has been updated:
  - ground truth
  - test set has been added to sftp server
SIRPRISE Challenge
- There may be an email bug so working with Diane to iron that out. UPDATE: I believe we fixed this. Sometimes though CodaLab is blocked and emails are sent to spam. Not sure how to deal with that yet.
- Challenge is over on the 23rd due to supply issues of some chemicals.

Planned for next month
MIDRC Challenge 0 which will feature docker submissions as well as the Image Comparator app and a jupyter notebook for annotator analysis. - Still waiting on credits for Azure use. UPDATE (3/31/2022): Infrastructure is built and now we are editing the template challenge to be the real challenge. Federated Learning Challenge: Still need VPN access to environment. Kendall Schmidt (from ACR) and Holger Roth (from NVIDIA) are creating a bash script that kicks off a participant container. I will be in charge of orchestrating the start of that script from the MedICI website. CodaLab (Open Source Team): Adding more functionality to the highlights page for the addition of dynamic news.

Planned for next month

MIDRC Challenge 0 which will feature docker submissions as well as the Image Comparator app and a jupyter notebook for annotator analysis. - Still waiting on credits for Azure use.
- UPDATE (3/31/2022): Infrastructure is built and now we are editing the template challenge to be the real challenge.
Federated Learning Challenge:
- Still need VPN access to environment.
- Kendall Schmidt (from ACR) and Holger Roth (from NVIDIA) are creating a bash script that kicks off a participant container.
- I will be in charge of orchestrating the start of that script from the MedICI website.
CodaLab (Open Source Team):
- Adding more functionality to the highlights page for the addition of dynamic news.

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