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Activities completed this month

  • Activities Completed This Month:

    • MIDRC - The challenge has ended and there were 4 finalists
      • Test phase: 4 participants
      • Validation phase: 7 participants
      • We have algorithm descriptions
    • CodaLab (Open Source Team):
    • We got the GPU worker working. I had deployed one temporarily and the Codalab team also created one and got it to work!
      • Automated tests now pass! (
      • GPU submissions work
      • I have 2 challenges launched preliminarily on codabench:
        • TACTIC:
      github.com/codalab/codabench)Image Removed
    • Check in any code changes as needed to fix issues found. We are moving into a phase where we are getting users to use Codabench. 
      • FAIR UNIVERSE – A group of people organizing competitions. This is good practice for testing Codabench.
  • Met with below groups on future directions of their challenges (we meet again in two-three weeks to check progress):
    • DGM-Image Statistics challenge: Deep Generative Modeling for Learning Medical Image Statistic
    • TACTIC: Understanding Time-Activity Curve and Time-Integrated Activity Variations in Radiopharmaceutical Therapy Challenge

    • Federated learning challenge:
      • We still need to run the final two participant submissions but that will have to wait till November.
    • Image Comparator App:
      • Finished adding authentication to the app. Users can sign up and be signed in, log in and log out
    MIDRC:
      Challenge is going well. 4-5 active users making sample submissions out of 35.
Planned for next month
  • Federated Learning Challenge:
    • Finalize runs on MGH data and check in with team for any retrospective.
     
  • Codalab\Codabench CodaLab (Open Source Team):
    • Reviewing a teammate's code.
    • Next step is to fix a competition creation bug where organizers can make challenges using the UI.
  • MIDRC:
    • Validation phase is beginning and we will see what that brings
  •  
  • Challenges Emily brought to the table (Meetings beginning in early Oct and they run roughly from Jan\Feb - May):
  • MIDRC:Image Annotion App updates:
  • Adding the concept of users
  • Creating a cleaned up image upload, app image list creation and task creation functionality set tied to the user.
    • More updates to come including:
  • easy to use tools creation interface or functionality
  • possible integration with OHIF
  • MonaiLabel integration for better segmentation control.
    • updated bootstrap (style)
MeetingDate
Bi-weekly Meeting #1

 

Bi-weekly Meeting #2

 

Bi-weekly Meeting #3

 

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