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Array data files consist of raw array data and/or derived array data. A variety of raw data files, produced by several different scanner makes and models, are supported by the caArray MAGE-TAB parser even though these raw data may not be in MAGE-TAB format. Derived array data refers to either normalized array data, or a data file with data combined from more than one hybridization or scan. The caArray MAGE-TAB parser supports some of these non-MAGE-TAB files, as well. Derived array data files in MAGE-TAB format are called data matrix files. The only data matrix files that caArray supports parses are copy number data matrix files. For more information, see File Types in caArray.

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