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Sections on this page include:
caArray Community Contribution
- caArray 054 - Step-By-Step Guide to Install and Use caArray Importer
- caArray 080 - A Step-by-Step Guide to Create a MAGE-TAB Template Specific to RPLA Project
caArray Installation and Upgrade
- caArray 005 - Do I need to create an empty database prior to caArray or other LSD tool installations?
- caArray 006 - Step by Step Guide to Install caArray 2.x Grid Service (caArray 2.2 and Under)
- caArray 015 - How do I solve caArray 2.2.0+ problems with localhost and related issues?
- caArray 020 - How do I configure Eclipse for caArray?
- caArray 026 - Can I change the port number after caArray installation?
- caArray 027 - How do we avoid a JBOSS port conflict between applications such as caArray and caTissue Suite?
- caArray 028 - How do I point the caArray grid service to a different grid indexing service?
- caArray 030 - Which ports are required for caArray to run?
- caArray 031 - How do we install caArray on multiple servers?
- caArray 044 - Should my caArray grid service be Analytical or Data Service?
- caArray 057 - I deployed caArray in Eclipse but got exception when I tested the caArray. Why?
- caArray 058 - Are there any guidelines for applying OS patching and Java updates on servers running caArray?
- caArray 059 - Where do I download the caArray 2.3.1 GUI Installer?
- caArray 062 - Where to get a complete list of caArray service URLs?
- caArray 066 - The installation for caArray installation or upgrade failed. Where can I find the error log?
- caArray 070 - An error reports the wrong version of Java. What is the problem?
- caArray 077 - How do we increase time-out period when running CQL queries?
- caArray 079 - Are there secure Grid services for caArray?
- caArray 083 - Can we delete the legacy files during caArray upgrade?
- caArray 078 - What browsers does caArray support?
- caArray 091 - Internet connection not needed for the caArray GUI installer
- caArray 093 - How To Build caArray From Source Code - An Illustrated Tutorial
Introduction to caArray Usage
- caArray 049 - Introduction to caArray - a High-level Workflow
- caArray 050 - Introduction to caArray - Browse and Search caArray Repository
- caArray 095 - Lists of Must-Have and Nice-to-Have Features to Support Next-Generation Sequencing Data
caArray User Account, Login and Admin Issues
- caArray 041 - caArray Account Management
- caArray 029 - How do I change the caArray admin e-mail address after installation?
- caArray 035 - How do we choose the correct caArray access role for a user?
- caArray 065 - Can we amend the ownership for a deleted user's experiment?
- caArray 084 - Can users change their passwords in caArray?
- caArray 024 - Does the caArray user account with system administrator role have access to all experimental data?
- caArray 045 - User registration is unable to send the user an email to confirm registration. What do we do?
Working with Array Design Files
- caArray 039 - Array Design Files
- caArray 036 - Working with Array Design Files in caArray
- caArray 010 - Where are the Array Design Files for caArray?
- caArray 052 - I would like to download an array design file, but I can't find it in caArray. Why?
- caArray 074 - Can I rename a design file and use it in a study?
- caArray 094 - Handling Array Designs
- caArray Demo-004 Using caArray: Uploading Array Design File (PowerPoint file)
Working with MAGE-TAB Files
- caArray 037 - MAGE-TAB Files
- caArray 007 - What are MAGE-TAB Files?
- caArray 008 - Should I use the Annotations tab or MAGE-TAB annotation files to annotate my experiment?
- caArray 009 - Highlights for Building caArray's MAGE-TAB Annotation Files
- caArray 060 - How do I export experiment annotation and data file into MAGE-TAB and GEO SOFT formats?
- caArray 080 - A Step-by-Step Guide to Create a MAGE-TAB Template Specific to RPLA Project
- caArray Demo-001 How to load MAGE-TAB data into caArray (CaArray_Demo_MAGE-TAB_Data_Upload_4_Revised_2.wmv)
Working with Data Files
- caArray 019 - caArray File Loading Process
- caArray 002 - How do I upload MicroArray Gene Expression Data into caArray?
- caArray 013 - Is there any size or format limitation on the files uploaded to caArray?
- caArray 014 - Which files can be uploaded into caArray?
- caArray 016 - Which file can be parsed into caArray? What is the benefit of file parsing?
- caArray 092 - Importing Data into caArray
- caArray 017 - What is the meaning of the caArray Status of Importing - Imported versus Imported Not Parsed?
- caArray 018 - What causes the error "Failed Validation"?
- caArray 051 - Which columns in Illumina expression csv array design files are acceptable in caArray?
- caArray 056 - How do I import an Affy .TXT file into caArray?
- caArray 061 - What is the difference between the annotation options that are available when importing data?
- caArray 067 - How do I resolve an error with unpacking the zip files?
- caArray 076 - How can I upload and store QC data in caArray?
- caArray 082 - The datafile is imported, but it is not downloadable. Why?
- caArray 023 - Can multiple users upload microarray datafiles under the same experiment?
- caArray 025 - Does caArray have version control on uploaded files?
- caArray 087 - Why Do I Get an Error Message When Attempting to Validate an Illumina SNP Data File in caArray?
- caArray 089 - How Do I Upload Very Large Datasets?
Managing Experiments
- caArray 088 - Finding Information on an Experiment
- caArray 038 - caArray Experiment Management
- caArray 034 - Can I edit my experiment that has already been made public?
- caArray 012 - How do I add an organism to the Organism List in caArray?
- caArray 032 - Can I recover a mistakenly deleted experiment from a caArray database backup?
- caArray 072 - Can I delete an experiment with the status as "In Progress"?
- caArray 090 - How do I change the inactivity session timeout delay?
Administrative Tasks in caArray
- caArray 077 - How do we increase time-out period when running CQL queries?
- caArray 100 - caArray Audit Trails
- caArray 068 - What can we find in an audit file?
Experiment Visibility and Data Sharing
- caArray 043 - Manage the Public Visibility of a caArray Experiment
- caArray 071 - How do I check if I am actually on caGrid sharing my microarray data?
- caArray 046 - Management Account Ownership
- caArray 022 - Can I change the ownership of the experiment in caArray?
- caArray 040 - caArray Global Settings
- caArray Demo-002 How to Use caArray to Share Pre-Published Data (PowerPoint file)
caArray Integration with Other Applications
caArray and UPT Integration
- caArray 047 - How do I create a caArray account with UPT?
- caArray 001 - Is UPT required for caArray or other application tools in LSD Bundle?
- caArray 003 - How do I create a caArray user with UPT?
- caArray 011 - What do I do when I see the error "Invalid Login" or the "No Application found" error when I log in via UPT"?
- caArray 086 - UPT was installed successfully but I could not log in as the super user to set up caArray. Why?
- caArray 053 - How do I remove the lock on my UPT superuser account?
- caArray 021 - How to I configure caArray for LDAP authentication?
- caArray Demo-005 Using UPT: Set up Application and Create caArray Users (PowerPoint file)
- caArray 042 - Is "user password" a required field for new user creation in UPT?
- caArray 075 - What is the difference between the "Group" in the UPT and the "Collaboration Group" in caArray?
- caArray 086 - UPT was installed successfully but I could not log in as the super user to set up caArray. Why?
- caArray Demo-005 Using UPT: Set up Application and Create caArray Users
- See also UPT and CSM FAQs
caArray and geWorkbench Integration
- caArray 004 - Can I access the geWorkbench application from caArray?
- caArray 033 - What is the version compatibility between geWorkbench and caArray?
- caArray Demo-003 - Using geWorkbench to Remote Access caArray Data (PowerPoint file)
caArray and caIntegrator Integration
caArray and caTissue Integration
No FAQ at this time.
