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Coding Scheme
HERE
Entities
HERE
Relations
RRF File Name | RRF Column Name | RRF Definition | NCI Meta only | LexGrid Model Element | Comments |
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| codingScheme.representsVersion |
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| codingScheme.codingSchemeName | hard coded in java file as "UMLS_SemNet" |
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| codingScheme.formalName | hard coded in java file as "UMLS Semantic Network" |
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| codingScheme.defaultLanguage | hard coded in java file as "en" |
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| codingScheme.approxNumConcepts | hard coded in java file as |
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| codingScheme.entityDescription | hard coded in java file as "The UMLS Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project. The network provides a consistent categorization of all concepts represented in the UMLS Metathesaurus." |
license.txt |
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| codingScheme.copyright | Read from license.txt file or hard coded reference in java file |
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| codingScheme.codingSchemeURI | hard coded in java file as "urn:lsid:nlm.nih.gov:semnet" |
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| codingScheme.relations.containerName | hard coded in java file as "relations" |
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| codingScheme.localNameList |
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| codingScheme.localNameList. | hard coded in java file as "UMLS_SemNet" |
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| codingScheme.localNameList |
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| codingScheme.localNameList. |
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| codingScheme.source |
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| codingScheme.source.content |
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| codingScheme.localNameList |
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| codingScheme.localNameList. |
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| codingScheme.localNameList |
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| codingScheme.localNameList. |
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| codingScheme.localNameList |
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| codingScheme.localNameList. |
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| codingScheme.localNameList |
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| codingScheme.localNameList. |
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| mappings.supportedFormat |
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| mappings.supportedFormat.localId | hard coded in java file as "text/plain" |
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| mappings.supportedFormat.uri | hard coded in java file as "urn:oid:2.16.840.1.113883.6.10:text_plain" |
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| mappings.supportedAssociation |
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SRDEF | RL |
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| mappings.supportedAssociation.localId |
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| mappings.supportedContext |
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| mappings.supportedSource |
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| mappings.supportedSource.localId | hard coded in java file as "NLM" |
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| mappings.supportedSource.uri | hard coded in java file as "urn:lsid:nlm.nih.gov" |
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| mappings.supportedHierarchy |
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| mappings.supportedHierarchy.localId | hard coded in java file as "is_a" |
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| mappings.supportedHierarchy.isForwardNavigable | hard coded as "true" |
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| mappings.supportedHierarchy.rootCode | hard coded as "@" |
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| mappings.supportedHierarchy.associationList | hard coded in java file as "hasSubtype" |
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| mappings.supportedAssociationQualifier |
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SRFLD | COL |
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| mappings.supportedProperty |
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| mappings.supportedProperty.localId | If SRDEF appears in the FIL column then this is treated a potential supported property and is entered in supported properties as such. |
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| mappings.supportedProperty.uri | hard coded in java file as "" |
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| mappings.supportedLanguage |
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| mappings.supportedLanguage.localId | hard coded in java file as "en" |
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| mappings.supportedLanguage.uri | hard coded in java file as "urn:oid:2.16.840.1.113883.6.84:en" |
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| mappings.supportedCodingScheme |
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| mappings.supportedCodingScheme.localId | hard coded in java file as "UMLS_SemNet" |
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| mappings.supportedCodingScheme.uri | hard coded in java file as "urn:lsid:nlm.nih.gov:semnet" |
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| mappings.supportedRepresentationalForm |
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| mappings.supportedConceptStatus |
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| mappings.supportedPropertyLink |
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| mappings.supportedPropertyQualifier |
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| mappings.supportedDataType |
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Entities
RRF File Name | RRF Column Name | RRF Definition | NCI Meta only | LexGrid Model Element | Comments |
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SRDEF | UI |
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| Entity.entityCode |
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SRDEF | STY/RL |
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| Entity.enitityDescription(inheritance path Entity->versionableAndDescribable) |
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| Entity.Property |
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SRDEF | NH |
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| Entity.Property.text.content |
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| Entity.Property.value.text.dataType | hard coded in java file as "text/plain" |
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| Entity.Property.propertyName | hard coded in java file as "NH" |
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| Entity.Property.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. |
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| Entity.presentation |
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| Entity.presentation.propertyName (inherited from Property) | Hard coded in java file as "STY/RL" or "ABR" |
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| Entity.presentation.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. |
SRDEF | STY/RL, ABR |
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| concept.presentation.text.content |
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| Entity.presentation.value.text.dataType | hard coded in java file as "text/plain" |
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| Entity.presentation.isPreferred | hard coded in java file as true. |
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| Entity.definition.propertyName (inherited from Property) | Hard coded in java file as "DEF" |
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| concept.definition.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. |
SRDEF | DEF |
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| Entity.definition.text.content |
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| Entity.definition.value.text.dataType | hard coded in java file as "text/plain" |
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| Entity.definition.isPreferred | hard coded in java file as true. |
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| Entity.comment |
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SRDEF | EX |
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| Entity.comment.propertyName (inherited from Property) | Hard coded in java file as "EX" |
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| Entity.comment.text.content |
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| Entity.comment.value.text.dataType | hard coded in java file as "text/plain" |
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| Entity.comment.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. |
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| Entity.instruction |
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| Entity.instruction.propertyName (inherited from Property) | Hard coded in java file as "UN" |
SRDEF | UN |
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| Entity.instruction.text.content |
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| Entity.instruction.value.text.dataType | hard coded in java file as "text/plain" |
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| Entity.instruction.propertyId | Generated value for property using "P" concatenated with a steadily incremented numerical value. |
Relations
RRF File Name | RRF Column Name | RRF Definition | NCI Meta only | LexGrid Model Element | Comments |
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SRSTR | RL |
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| AssociationPredicate.associationName | In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed |
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| AssociationEnity.isTransitive | hard coded to true if the value of RL is "isa" |
SRSTR | RL |
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| AssociationEntity.forwardName | Reversed when value of RL is "isa" |
SRSTR | STY/RL |
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| AssociationSource.sourceEntityCode | Reversed when value of RL is "isa" |
SRSTR | STY/RL |
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| AssociationTarget.targetEntityCode | No comments |
SRDEF | RIN |
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| AssociationEntity.reverseName | No comments |
SRDEF | DEF |
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| AssociationEntity.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable) | When SRDEF value RT is "RL" |
SRSTRE1 | UI/STY(first argument) |
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| AssociationSource.sourceEntityCode | Reversed when value of RL is "isa" |
SRSTRE1 | UI/STY(2nd argument) |
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| AssociationTarget.targetEntityCode | Reversed when value of RL is "isa" |
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