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Step

Action

1

As the root user, enter the following in the /etc/profile file.
A PATH variable should already be created in this file, so be sure to define the JAVA_HOME and ANT_HOME export before the PATH export.
Replace <installation_directory> with the directory where you have installed the Java SDK and Ant.
(The location example in the Apache Ant installation (p. 5) is /usr/java.)
export JAVA_HOME={)<installation_directory>()/jdk1.5.0_10
export ANT_HOME=()<installation_directory>()/apache-ant-1.7.0
export PATH=$JAVA_HOME/bin:$ANT_HOME/bin:$PATH

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2

Log out and log back in so that the system recognizes your changes.

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Step

Action

1

From the command line, enter:
echo $JAVA_HOME
echo $ANT_HOME
Both of these commands should return the location where you installed these tools.

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2

To verify your Java SDK installation, enter java -version from a command prompt.//
You should see java version "1.5.0_10".

Connection to CVS Repository:

1) Connect to CVS repository
2) Here are the parameters
a) Host: cbiocvs2.nci.nih.gov
b) Repository path: /share/content/cvsroot
c) User: anonymous
d) Password: anonymous
e) Connection type: pserver

Downloading and Deploying the Codebase:

Step :1
Check out caintergrator-analysis commons from HEAD or provided CVS tag. Built it using ant script. (Please follow the steps)

a) Open a COMMAND prompt. cd into caintergrator-analysis commons folder.
b) then type ant build_dependency . It will start the build and get the message
BUILD SUCCESSFUL.
c) Do a CVS check out of the caintegrator-analysis-server
Step:2
Download the latest client jar file (use the exceptions version) from: http://stats.math.uni-augsburg.de/Rserve/down.shtmlImage Added after agreeing to their licensing terms and conditions.

Copy the downloaded file into the lib directory under the analysis server install directory and rename it to Rserve.jar .
Step :3
1) Build it using ant script from command prompt.
a) cd into caintergrator-analysis commons folder.
b) then type ant build_tar . It will start the build and you will get the message
BUILD SUCCESSFUL.
Step :4
Setup JMS Configuration Files:

1) Copy the file "caintegrator-jbossmq-destinations-service.xml" from \artifacts to the directory where you installed JBoss.
/jboss-4.0.4.GA/server/default/deploy/jms folder
2) Copy the application specific file for example "rembrandt-jbossmq-destinations-service.xml" (for REMBRANDT) from \artifacts to the directory where you installed JBoss.
/jboss-4.0.4.GA/server/default/deploy/jms folder

Step :5
Deploy the Analysis Server.