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h2. OWL: RDF Schema Features

|| OWL Mapping - Protégé (New) \\
OWL Element || LexGrid || Comments ||
| owl:ontology | codingScheme | No comments \\ |
| xml:lang | codingScheme.defaultLanguage | Default is \'en\' |
| dc:title | codingScheme.formalName | No comments |
| rdfs:label | codingScheme.localName | No comments |
| URI | codingScheme.registeredName | No comments |
| owl:versionInfo | codingScheme.representsVersion | Default is \'UNASSIGNED\' |
| dc:rights | codingScheme.copyright | No comments |
| owl:Class (Thing, Nothing) | entity | No comments |
| rdf:ID | entity.entityCode | No comments |
| | entity.isActive | Hard coded as \"Active\" |
| | entity.isAnonymous | No comments |
| rsfs:label | entity.entityDescription | No comments |
| | entity.presentation | No comments |
| rdf:comment | entity.comment | No comments |
| rdfs:subClassOf | associationPredicate & associationEntity | No comments |
| | associationPredicate.associationName = \"subClassOf\" | No comments |
| | associationEntity.entityCode = \"subClassOf\" | No comments |
| | associationEntity.forwardName = \"subClassOf\" | No comments |
| | associationEntity.isNavigable = \"true\" | No comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | | |
| rdf:Property (ObjectProperty/DatatypeProperty)

 | associationPredicate.associationName = \"objectProperty/datatypeProperty\"

 | An association between two

 classes |
| | associationEntity.propertyName  = \"type\"

 | No

 comments |
| | associationEntity.propertyValue = \"objectProperty/datatypeProperty\"

 | No

 comments |
| | | No comments |
| | | No comments |
| rdfs:subPropertyOf | associationPredicate & associationEntity | No comments |
| | associationPredicate.associationName = \"subPropertyOf\"

 | No

 comments |
| | associationEntity.entityCode = \"subPropertyOf\"

 | No

 comments |
| | associationEntity.forwardName = \"subPropertyOf\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | | |
| rdfs:domain

 | associationPredicate & associationEntity

 | No

 comments |
| | associationPredicate.associationName = \"domain\"

 | No

 comments |
| | associationEntity.entityCode = \"domain\"

 | No

 comments |
| | associationEntity.forwardName = \"domain\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | | |
| rdfs:range

 | associationPredicate & associationEntity

 | No

 comments |
| | associationPredicate.associationName = \"range\"

 | No

 comments |
| | associationEntity.entityCode = \"range\"

 | No

 comments |
| | associationEntity.forwardName = \"range\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"false\"

 | No

 comments |
| | | No comments |
| Individual | entity | No comments |
| | entity.EntityType = \"instance\"

 |

h2. OWL: (In)Equality

|| OWL Mapping - Protégé (6.0)

 \\
OWL Element

 || LexGrid || Comments ||
| owl:equivalentClass

 | associationPredicate & associationEntity

 | No

 comments \\ |
| | associationPredicate.associationName = \"equivalentClass\"

 | No

 comments |
| | associationEntity.entityCode = \"equivalentClass\"

 | No

 comments |
| | associationEntity.forwardName = \"equivalentClass\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | associationEntity.reverseName=\"equivalentClass\"

 | No

 comments |
| | | No comments |
| owl:equivalentProperty | associationPredicate & associationEntity | No comments |
| | associationPredicate.associationName = \"equivalentProperty\"

 | No

 comments |
| | associationEntity.entityCode = \"equivalentProperty\"

 | No

 comments |
| | associationEntity.forwardName = \"equivalentProperty\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | associationEntity.reverseName=\"equivalentProperty\"

 | No

 comments |
| | | |
| owl:sameAs

 | associationPredicate & associationEntity

 | No

 comments |
| | associationPredicate.associationName = \"sameAs\"

 | No

 comments |
| | associationEntity.entitycode = \"sameAs\"

 | No

 comments |
| | associationEntity.forwardName = \"sameAs\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | associationEntity.reverseName=\"sameAs\"

 | No

 comments |
| | | |
| owl:differentFrom

 | associationPredicate & associationEntity

 | No

 comments |
| | associationPredicate.associationName = \"differentFrom\"

 | No

 comments |
| | associationEntity.entityCode = \"differentFrom\"

 | No

 comments |
| | associationEntity.forwardName = \"differentFrom\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | associationEntity.reverseName= \"differentFrom\"

 | No

 comments |
| | | |
| owl:AllDifferent

 | associationPredicate & associationEntity

 | No

 comments |
| | associationPredicate.associationName = \"AllDifferent\"

 | No

 comments |
| | associationEntity.entityCode = \"AllDifferent\"

 | No

 comments |
| | associationEntity.forwardName = \"AllDifferent\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | associationEntity.reverseName= \"AllDifferent\"

 | No

 comments |

h2. OWL: Property Characteristics

|| OWL Mapping - Protégé (6.0)

 \\
OWL Element

 || LexGrid || Comments ||
| owl:inverseOf

 | associationPredicate & associationEntity

 | No

 comments\\ |
| | associationPredicate.associationName = \"inverseOf\"

 | No

 comments |
| | associationEntity.entitycode = \"inverseOf\"

 | No

 comments |
| | associationEntity.forwardName = \"inverseOf\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | associationEntity.reverseName=\"inverseOf\"

 | No

 comments |
| | | |
| owl:TransitiveProperty | associationEntity.propertyName = \"type\"

 | No

 comments |
| | associationEntity.propertyValue = \"transitiveProperty\"

 | No comments

 |
| owl:SymmetricProperty

 | associationEntity.propertyName = \"type\"

 | No

 comments |
| | associationEntity.propertyValue = \"symmetricProperty\"

 | No

 comments |
| owl:InverseFunctionalProperty | associationEntity.propertyName = \"type\"

 | No

 comments |
| | associationEntity.propertyValue = \"inverseFunctionalProperty\"

 | No comments

 |
| owl:FunctionalProperty

 | associationEntity.propertyName = \"type\"

 | No

 comments |
| | associationEntity.propertyValue = \"functionalProperty\"

 | No

 comments |

h2. OWL: Property Restrictions

|| OWL Mapping - Protégé (6.0)

 \\
OWL Element

 || LexGrid || Comments ||
| owl:Restriction

 | associationEntity & associationSource/associationTarget

 | Create  an anonymous entity for the restriction. Note: if the restriction is  under an intersectionOf, system creates an anonymous class for  intersectionOf which contains the

 restriction |
| | associationEntity.entityCode starts with \"@\"

 | System generated

 code |
| | associationEntity.isActive = true

 | No

 comments |
| | associationEntity.isAnonymous = true

 | Hardcoded \"True\"

 |
| | associationSource.entityCode starts with \"@\"

 | System generated

 code |
| | associationTarget.entityCode starts with \"@\"

 | System generated

 code |
| | | No comments |
| owl:onProperty | associationPredicate | Use to define from associationSource to associationTarget |
| | | |
| owl: allValuesFrom | associationEntity.entityDescription | String of only values |
| | associationEntity.presentation.propertyId | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.presentation.propertyName

 | Hardcoded \"label\"

 |
| | associationEntity.presentation.isPreferred = true

 | Hardcoded \"true\"

 |
| | associationEntity.presentation.text

 | String of only

 values |
| | associationTarget.associationQualifier = \"allValueFrom\"

 | No

 comments |
| | | |
| owl: someValuesFrom | associationEntity.entityDescription | String of some values |
| | associationEntity.presentation.propertyId

 | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.presentation.propertyName

 | Hardcoded \"textualPresentation\"

 |
| | associationEntity.presentation.isPreferred = true

 | Hardcoded \"true\"

 |
| | associationEntity.presentation.text

 | String of someValuesFrom

 values |
| | associationTarget.associationQualifier = \"someValuesFrom\"

 | No

 comments |
| | | |
| owl:intersectionOf

 | associationEntity & associationSource/associationTarget

 | Create  an anonymous entity for the restriction. Note: if the restriction is  under an intersectionOf, system creates an anonymous class for  intersectionOf which contains the

 restriction |
| | associationEntity.entityCode starts with \"@\"

 | System generated

 code |
| | associationEntity.isActive = true

 | No

 comments |
| | associationEntity.isAnonymous = true

 | Hardcoded \"True\"

 |
| | associationEntity.entityDescription

 | String of intersectionOf values (ie. Pizza and not VegetarianPizza)

 |
| | associationEntity.presentation.propertyId

 | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.presentation.propertyName

 | Hardcoded \"textualPresentation\"

 |
| | associationEntity.presentation.isPreferred = true

 | Hardcoded \"true\"

 |
| | associationEntity.presentation.text

 | String of intersectionOf values (ie. Pizza and not VegetarianPizza)

 |
| | associationEntity.conceptProperty.propertyId

 | Generated value for property using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.conceptProperty.propertyName = type

 | Hardcoded \"type\"

 |
| | associationEntity.conceptProperty.text = \"owl:intersectionOf\"

 | |
| | associationSource.entityCode starts with \"@\"

 | System generated

 code |
| | associationTarget.entityCode starts with \"@\"

 | System generated

 code |
| | | |
| UnionOf | associationEntity & associationSource/associationTarget | No comments |
| | associationEntity.entitycode starts with \"@\"

 | System generated

 code |
| | associationEntity.isActive = true

 | No

 comments |
| | associationEntity.isAnonymous = true

 | No

 comments |
| | associationEntity.entityDescription | String of Union of values (ie. MozzarellaTopping or MushroomTopping or TomatoTopping)

 |
| | associationEntity.presentation.propertyId

 | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.presentation.propertyName

 | Hardcoded \"textualPresentation\"

 |
| | associationEntity.presentation.isPreferred = true

 | Hardcoded \"true\"

 |
| | associationEntity.presentation.text

 | String of intersectionOf values (ie. Pizza and not VegetarianPizza)

 |
| | associationEntity.conceptProperty.propertyId

 | Generated value for property using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.conceptProperty.propertyName = type

 | Hardcoded \"type\"

 |
| | associationEntity.conceptProperty.text = \"owl:unionOf\"

 | No

 comments |
| | associationSource.entityCode starts with \"@\"

 | System generated

 code |
| | associationTarget.entityCode starts with \"@\"

 | System generated

 code |
| | | |
| owl:complementOf | associationPredicate | associationPredicate.associationName = \"complementOf\"

 |
| owl:oneOf

 | associationEntity.entityDescription

 | String of oneOf

 values |
| | associationEntity.presentation.propertyId

 | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.presentation.propertyName

 | Hardcoded \"textualPresentation\"

 |
| | associationEntity.presentation.isPreferred = true

 | Hardcoded \"true\"

 |
| | associationEntity.presentation.text

 | String of oneOf

 values |
| | associationEntity.conceptProperty.propertyId

 | Generated value for property using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.conceptProperty.propertyName = type

 | Hardcoded \"type\"

 |
| | associationEntity.conceptProperty.text = \"owl:intersectionOf\"

 | No

 comments |
| | | |
| owl:hasValue

 | associationTarget.associationQualifier=\"owl:hasValue\"

 | No

 comments |
| | associationData.value

 | eg. if the type is int, associationData has the

 value |
| | | |
| owl:minCardinality

 | associationEntity.entityDescription

 | String of minCardinality Values (ie.  (hasTopping min 3) and Pizza)

 |
| | associationEntity.presentation.propertyId

 | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.presentation.propertyName

 | Hardcoded \"textualPresentation\"

 |
| | associationEntity.presentation.isPreferred = true

 | Hardcoded \"true\"

 |
| | associationEntity.presentation.text

 | String of minCardinality Value (ie.  (hasTopping min 3) and Pizza)

 |
| | associationEntity.conceptProperty.propertyId

 | Generated value for property using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.conceptProperty.propertyName = type

 | Hardcoded \"type\"

 |
| | associationEntity.conceptProperty.text = \"owl:intersectionOf\"

 | No

 comments |
| | associationTarget.associationQualifier = \"owl:minCardinality\"

 | No

 comments |
| | associationData.value

 | eg. if the type is int, associationData has the

 value |
| | | |
| owl:maxCardinality

 | associationEntity.entityDescription

 | String of maxCardinality Values (ie.  (hasTopping max 2) and Pizza)

 |
| | associationEntity.presentation.propertyId

 | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.presentation.propertyName

 | Hardcoded \"textualPresentation\"

 |
| | associationEntity.presentation.isPreferred = true

 | Hardcoded \"true\"

 |
| | associationEntity.presentation.text

 | String of maxCardinality Values (ie.  (hasTopping max 2) and Pizza)

 |
| | associationEntity.conceptProperty.propertyId

 | Generated value for property using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.conceptProperty.propertyName = type

 | Hardcoded \"type\"

 |
| | associationEntity.conceptProperty.text = \"owl:intersectionOf\"

 | No

 comments |
| | associationTarget.associationQualifier = \"owl:maxCardinality\"

 | No

 comments |
| | associationData.value

 | eg. if the type is int, associationData has the

 value |
| | | |
| owl:cardinality

 | associationEntity.entityDescription

 | String of cardinality

 Values |
| | associationEntity.presentation.propertyId

 | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.presentation.propertyName

 | Hardcoded \"textualPresentation\"

 |
| | associationEntity.presentation.isPreferred = true

 | Hardcoded \"true\"

 |
| | associationEntity.presentation.text

 | String of cardinality

 Values |
| | associationEntity.conceptProperty.propertyId

 | Generated value for property using \"P\" concatenated with a steadily incremented numerical value.

 |
| | associationEntity.conceptProperty.propertyName = type

 | Hardcoded \"type\"

 |
| | associationEntity.conceptProperty.text = \"owl:intersectionOf\"

 | No

 comments |
| | associationTarget.associationQualifier = \"owl:cardinality\"

 | No

 comments |
| | associationData.value

 | eg. if the type is int, associationData has the

 value |
| | | |
| owl:disjointWith

 | associationPredicaet | association.id = \"disjointWith\"

 |

h2. OWL: Annotation Property

|| OWL Mapping - Protégé (6.0)

 \\
OWL Element

 || LexGrid || Comments ||
| rdfs:label

 | Presentation | No comments |
| | entity.presentation.propertyId

 | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | entity.presentation.propertyName = \"textualPresentation\"

 | Hardcoded \"textualPresentation\"

 |
| | entity.presentation.isPreferred = true

 | Hardcoded \"true\"

 |
| | entity.presentation.text

 | Value of rdfs:label

 |
| | | |
| rdfs:comment

 | Comment | No comments |
| | entity.comment.propertyId

 | Generated value for property textual presentation using \"P\" concatenated with a steadily incremented numerical value.

 |
| | entity.comment.propertyName = \"comment\"

 | Hardcoded \"comment\"

 |
| | entity.presentation.text

 | Value of rdfs:comment

 |
| | | |
| rdfs:seeAlso

 | entityProperty | No comments |
| rdfs:isDefinedBy

 | entityProperty | No comments |

h2. OWL: Versioning

|| OWL Mapping - Protégé (6.0)

 \\
OWL Element

 || LexGrid || Comments ||
| owl:versionInfo

 | codingScheme.representsVersion

 | No comments

 |
| priorVersion | | Not Mapped |
| backwardCompatibleWith | | Not Mapped |
| owl:incompatibleWith | associationPredicate & associationEntity | No comments |
| | associationPredicate.associationName = \"imcompatibleWith\"

 | No

 comments |
| | associationEntity.entityCode = \"incompatibleWith\"

 | No

 comments |
| | associationEntity.forwardName = \"incompatibleWith\"

 | No

 comments |
| | associationEntity.isNavigable = \"true\"

 | No

 comments |
| | associationEntity.isTransitive=\"true\"

 | No

 comments |
| | associationEntity.reverseName=\"incompatibleWith\"

 | No comments

 |
| DeprecatedClass | Concept attribute setIsActive = false | Not Mapped |
| DeprecatedProperty | | Not Mapped |

h2. Legacy Complex Properties Mapping

|| tag || presentation || source || represenational form || qualifier || model element || value column name || model element ||
| | | | | | | | |
| go-term | x | | | | | propertyValue | |
| go-id | | | | x | propertyQualifierId | val1 | PropertyQualifier attribute content? |
| go-source | | | | x | propertyQualifierId | val1 | PropertyQualifier attribute content? |
| source-date | | | | x | propertyQualifierId | val1 | PropertyQualifier attribute content? |
| | | | | | | | |
| term-name | x | | | | | propertyValue | |
| term-group | | | x | | | representationalForm | property attribute |
| term-source | | x | | | | attributeValue | source |
| | | | | | | | |
| def-source | | x | | | | attributeValue | source |
| def-definition | x | | | | | propertyValue | definition |
| Definition_Review_Date | | | | x | propertyQualifierId | val1 | PropertyQualifier attribute content? |
| Definition_Reviewer_Name | | | | x | propertyQualifierId | val1 | PropertyQualifier attribute content? |
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