h2. Solution

This guide shows how to add clinical annotation and genomic  microarray data to an existing study in caIntegrator, with a focus on  common obstacles and pitfalls that may arise in the process. It assumes  that you already have basic familiarity with the program and have  created a study containing at least one source for both annotation and  array data. It also assumes that you have additional sources available,  namely:
* Your clinical annotations in the form of a comma delimited text  (CSV) file containing at least one field with unique IDs for each  subject
* The host name of the caArray server where your data is stored, plus  the experiment ID (if you set the data as private, you will also need  the user name and password for accessing the data)
* Another two CSV files -- a 'mapping file' that maps the subject IDs  in your annotations to their corresponding sample IDs in caArray, and a  'control training file' that lists the sample IDs of all control  subjects
The guide is presented in a step-by-step instructional format, with each step accompanied by a screenshot from caIntegrator. A hyperlinked index of all the steps appears below.

h3. Getting Started

* [How To Add Data to an Existing Study in caIntegrator - Step 1.0|How To Add Data to an Existing Study in caIntegrator - Step 1.0]
* [How To Add Data to an Existing Study in caIntegrator - Step 1.1|How To Add Data to an Existing Study in caIntegrator - Step 1.1]
* [How To Add Data to an Existing Study in caIntegrator - Step 1.2|How To Add Data to an Existing Study in caIntegrator - Step 1.2]
* [How To Add Data to an Existing Study in caIntegrator - Step 1.3|How To Add Data to an Existing Study in caIntegrator - Step 1.3]

h3. Loading Additional Clinical Data

* [How To Add Data to an Existing Study in caIntegrator - Step 2.0|How To Add Data to an Existing Study in caIntegrator - Step 2.0]
* [How To Add Data to an Existing Study in caIntegrator - Step 2.1|How To Add Data to an Existing Study in caIntegrator - Step 2.1]
* [How To Add Data to an Existing Study in caIntegrator - Step 2.2|How To Add Data to an Existing Study in caIntegrator - Step 2.2]
* [How To Add Data to an Existing Study in caIntegrator - Step 2.3|How To Add Data to an Existing Study in caIntegrator - Step 2.3]
* [How To Add Data to an Existing Study in caIntegrator - Step 2.4|How To Add Data to an Existing Study in caIntegrator - Step 2.4]
* [How To Add Data to an Existing Study in caIntegrator - Step 2.5|How To Add Data to an Existing Study in caIntegrator - Step 2.5]
* [How To Add Data to an Existing Study in caIntegrator - Step 2.6|How To Add Data to an Existing Study in caIntegrator - Step 2.6]
* [How To Add Data to an Existing Study in caIntegrator - Step 2.7|How To Add Data to an Existing Study in caIntegrator - Step 2.7]
* [How To Add Data to an Existing Study in caIntegrator - Step 2.8|How To Add Data to an Existing Study in caIntegrator - Step 2.8]
* [How To Add Data to an Existing Study in caIntegrator - Step 2.9|How To Add Data to an Existing Study in caIntegrator - Step 2.9]

h3. Querying Clinical Data

* [How To Add Data to an Existing Study in caIntegrator - Step 3.0|How To Add Data to an Existing Study in caIntegrator - Step 3.0]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.1|How To Add Data to an Existing Study in caIntegrator - Step 3.1]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.2|How To Add Data to an Existing Study in caIntegrator - Step 3.2]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.3|How To Add Data to an Existing Study in caIntegrator - Step 3.3]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.4|How To Add Data to an Existing Study in caIntegrator - Step 3.4]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.5|How To Add Data to an Existing Study in caIntegrator - Step 3.5]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.6|How To Add Data to an Existing Study in caIntegrator - Step 3.6]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.7|How To Add Data to an Existing Study in caIntegrator - Step 3.7]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.8|How To Add Data to an Existing Study in caIntegrator - Step 3.8]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.9|How To Add Data to an Existing Study in caIntegrator - Step 3.9]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.10|How To Add Data to an Existing Study in caIntegrator - Step 3.10]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.11|How To Add Data to an Existing Study in caIntegrator - Step 3.11]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.12|How To Add Data to an Existing Study in caIntegrator - Step 3.12]
* [How To Add Data to an Existing Study in caIntegrator - Step 3.13|How To Add Data to an Existing Study in caIntegrator - Step 3.13]

h3. Loading Another Genomic Dataset

* [How To Add Data to an Existing Study in caIntegrator - Step 4.0|How To Add Data to an Existing Study in caIntegrator - Step 4.0]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.1|How To Add Data to an Existing Study in caIntegrator - Step 4.1]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.2|How To Add Data to an Existing Study in caIntegrator - Step 4.2]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.3|How To Add Data to an Existing Study in caIntegrator - Step 4.3]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.4|How To Add Data to an Existing Study in caIntegrator - Step 4.4]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.5|How To Add Data to an Existing Study in caIntegrator - Step 4.5]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.6|How To Add Data to an Existing Study in caIntegrator - Step 4.6]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.7|How To Add Data to an Existing Study in caIntegrator - Step 4.0]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.8|How To Add Data to an Existing Study in caIntegrator - Step 4.0]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.9|How To Add Data to an Existing Study in caIntegrator - Step 4.9]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.10|How To Add Data to an Existing Study in caIntegrator - Step 4.10]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.11|How To Add Data to an Existing Study in caIntegrator - Step 4.11]
* [How To Add Data to an Existing Study in caIntegrator - Step 4.12|How To Add Data to an Existing Study in caIntegrator - Step 4.12]

h3. Querying Array and Mapping Data

* [How To Add Data to an Existing Study in caIntegrator - Step 5.0|How To Add Data to an Existing Study in caIntegrator - Step 5.0]
* [How To Add Data to an Existing Study in caIntegrator - Step 5.1|How To Add Data to an Existing Study in caIntegrator - Step 5.1]
* [How To Add Data to an Existing Study in caIntegrator - Step 5.2|How To Add Data to an Existing Study in caIntegrator - Step 5.2]
* [How To Add Data to an Existing Study in caIntegrator - Step 5.3|How To Add Data to an Existing Study in caIntegrator - Step 5.3]
* [How To Add Data to an Existing Study in caIntegrator - Step 5.4|How To Add Data to an Existing Study in caIntegrator - Step 5.4]
* [How To Add Data to an Existing Study in caIntegrator - Step 5.5|How To Add Data to an Existing Study in caIntegrator - Step 5.5]
* [How To Add Data to an Existing Study in caIntegrator - Step 5.6|How To Add Data to an Existing Study in caIntegrator - Step 5.6]
* [How To Add Data to an Existing Study in caIntegrator - Step 5.7|How To Add Data to an Existing Study in caIntegrator - Step 5.7]
* [How To Add Data to an Existing Study in caIntegrator - Step 5.8|How To Add Data to an Existing Study in caIntegrator - Step 5.8]
* [How To Add Data to an Existing Study in caIntegrator - Step 5.9|How To Add Data to an Existing Study in caIntegrator - Step 5.9]

h2. Have a comment?

Please leave your comment in the [caIntegrator End User Forum|https://cabig-kc.nci.nih.gov/Molecular/forums/viewforum.php?f=23&sid=5d0023efa82739d1127556a15b85311c].

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