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h1. |
Protégé
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Software
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Updates
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Software
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Updates
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Only
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- Copy
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- the
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- following
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- folders
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- and
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- scripts
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- from
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- the
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- previous
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- version
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- Protégé
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- server
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- folder
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- to
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- the
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- newly
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- created
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- server
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- folder:
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Code Block
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run_rmiregistry.sh run_protege\_ server_nci.sh shutdown_protege_server.sh PromptNCIPlugins.properties protege.properties codegen.dat workflow folder
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- Navigate to the Protégé.Client
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- folder
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- and
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- transfer
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- the
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- following
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- script:
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Code Block
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run_protege <PROTÉGÉ INSTANCE>.sh protege.properties PromptNCIPlugins.properties
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- Navigate to the Explanation.Server
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- directory
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- and
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- transfer
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- the
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- following
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- files:
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Code Block
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start_explanation_server.sh restart_explanation_server.sh stop_explanation_server.sh
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- Open the start_explanation_server.sh
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- file,
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- and
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- modify
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- the
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- following
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- line
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- to
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- match
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- the
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- newest
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- Protégé
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- server
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- version
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- number:
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Code Block
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protege_install=/usr/local/protégé/Protégé_x.x/<PROTÉGÉ INSTANCE>/Protege.Server-x.x.x
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- If there is a previous version of the explanation server running, shutdown is required before starting the new instance. To verify, type 'ps -ef | grep server' to view all running server instances. If an explanation server is running, you should see two different processes, one for the explanation server, as well as the Protégé server.
- Navigate to the previous explanation server folder version (this folder should be located in the same directory as the newest version), and run the explanation server folder shutdown script (./stop_explanation_server.sh).
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- You
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- can
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- type
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- 'ps
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- -ef
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- |
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- grep
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- server'
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- to
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- verify
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- that
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- the
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- explanation
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- server
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- process
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- has
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- been
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- terminated:
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- Navigate
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- to
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- the
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- new
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- explanation
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- server
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- folder
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- (usr/local/protégé/Protégé_x.x/<PROTÉGÉ
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- INSTANCE>/Explanation.Server-x.x.x)
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- and
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- run
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- './start_explanation_server.sh
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- --protege-standalone
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- --port
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- <port>
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- /app/protege/data/Protege_x.x/<PROTEGE-INSTANCE>/database-project.pprj.
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- To
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- determine
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- the
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- proper
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- port
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- number
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- to
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- use,
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- refer
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- to
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- the
...
...
...
...
...
- .
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- After
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- the
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- server
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- has
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- initiated
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- startup,
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- type
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- 'tail
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- -f
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- nohup.out'
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- to
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- view
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- start
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- up
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- status.
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- Within
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- the
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- nohup.out
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- file,
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- the
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- explanation
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- server
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- indicates
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- it
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- is
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- started
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- when
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- you
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- can
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- see
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- the
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- message
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- "Jena,
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- Classification,
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- and
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- Extracting'
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- all
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- have
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- been
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- initialized,
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- and
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- finally
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- a
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- "Server
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- started,
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- listening
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- on
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- port
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- xxxx
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- .....".
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- After
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- the
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- explanation
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- server
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- is
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- up
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- and
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- running,
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- the
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- same
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- steps
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- must
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- be
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- performed
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- for
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- proper
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- Protégé
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- server
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- startup.
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- If
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- there
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- is
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- a
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- previous
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- version
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- running,
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- it
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- must
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- be
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- shutdown
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- before
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- starting
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- the
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- new
...
- version.
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- Type
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- 'ps
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- -ef
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- |
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- grep
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- server'
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- to
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- view
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- all
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- server
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- instances,
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- and
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- if
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- a
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- previous
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- instance
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- is
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- running,
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- navigate
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- to
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- the
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- previous
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- version's
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- server
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- folder
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- (/usr/local/protege/Protege_x.x/<PROTEGE_INSTANCE>/<previous
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- Protege
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- server
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- instance>,
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- and
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- run
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- the
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- server
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- shutdown
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- script
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- (./shutdown_protege_server.sh
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- localhost:<port>).
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- Notice
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- for
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- the
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- Protégé
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- server
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- shutdown
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- script
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- the
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- port
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- is
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- passed
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- as
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- an
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- argument.
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- This
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- will
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- be
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- needed
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- for
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- proper
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- server
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- shutdown.
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- Navigate
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- to
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- your
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- Protégé
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- server
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- directory,
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- and
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- verify
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- if
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- there
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- is
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- a
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- softlink
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- to
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- the
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- workflow
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- directory.
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- This
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- directory
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- contains
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- records
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- of
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- users
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- assigned
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- workflow
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- tasks,
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- and
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- can
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- be
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- viewed
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- from
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- the
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- NCI
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- Workflow
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- tab
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- from
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- the
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- client,
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- if
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- proper
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- workflow
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- permissions
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- have
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- been
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- provided.
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- If
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- the
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- softlink
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- is
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- not
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- present,
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- type
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- '
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- ln
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- -
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- /app/protégé/data/workflow
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- '.
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- This
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- command
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- will
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- create
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- a
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- soft
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- link
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- to
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- the
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- workflow
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- folder
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- which
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- is
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- centralized
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- in
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- the
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- specified
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- directory.
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- Restart
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- the
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- server
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- by
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- running
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- 'run_protege_server_nci.sh.'
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- Type
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- 'tail
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- -f
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- console.txt'
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- to
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- verify
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- that
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- it's
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- up
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- and
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- running.
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- You
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- will
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- see
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- a
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- message
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- displaying
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- "Protege
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- server
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- ready
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- to
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- accept
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- connections".
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- Connect
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- to
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- the
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- dev
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- server
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- via
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- Protégé
...
- client
...
- to
...
- by
...
- navigating
...
- to
...
- the
...
- new
...
- client
...
- folder
...
- and
...
- running
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- 'run_protege_<PROTÉGÉ
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- INSTANCE>.sh'.
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- Type
...
- in
...
- the
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- username
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- /
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- password
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- and
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- select
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- a
...
- project
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- from
...
- the
...
- project
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- list
...
- display
...
- window.
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- Confirm
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- that
...
- the
...
- project
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- is
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- viewable
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- from
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- the
...
- GUI.
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