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Question: How do I
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{{FAQ
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release=caIntegrator 1.2
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entrydate=March 23, 2011
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topic=CaIntegrator Usage
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add a new array platform in caIntegrator?
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Topic: caIntegrator Usage
Release: caIntegrator 1.2 and above
Date entered: 03/23/2011
Answer
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You can create a study without genomic data, but you cannot add genomic data to a caIntegrator study without a corresponding supported array platform. Currently, caIntegrator only supports following types of platforms:
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Affymetrix Gene Expression,
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Affymetrix Copy Number, Agilent Gene Expression, and Agilent Copy Number. Please refer to the User Guide for
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step-by-step
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instructions on how to create a new platform.
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To add a new platform, the array annotation file is required. For Affymatrix Affymetrix platforms, please refer to *GeWorkbench025 * for how to obtain the annotation file. For other platforms, Please please refer to the following resources:
- :GEO
- :Arrayexpress
}}
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