Page History

Versions Compared

changes.mady.by.user Unknown User (bearceben)

Saved on May 13, 2020

compared with

changes.mady.by.user Unknown User (bearceben)

Saved on May 27, 2020

A quiet month due to Covid related projects and demands.

It is worth mentioning that I mapped out some database table joins for CodaLab V1 that might be helpful in the future. Attached below:

Image Added

1) Implemented docker submissions for MedICI site (should work for upcoming challenges).

2) Made a MedICI PR static site to demonstrated the MedICI capabilities.

Planned for next month
1) Submit real dockers from Setup MICCAI 2020 competition. 2) Make edits to PR website as needed.Test docker submission on dummy MICCAI 2020 VM for practice

Planned for next month

1) Submit real dockers from Setup MICCAI 2020 competition.

2) Make edits to PR website as needed.Test docker submission on dummy MICCAI 2020 VM for practice

Comments
Things that went well:Things that could be improved: Got the competition running Learned how to implement https security through "certbot" certificates. Remember to put the certs created in the /codalab-competitions/certs/ folder and link to them in the .env file. Got docker submissions implemented on the MICCAI 2020 VM. This is important because it proves I can migrate this functionality to other systems. Notes here. Things that didn't go well or needs attention: The initial MICCAI 2020 VM was the old MICCAI 2019 VM and upon implementing https I couldn't log in. I think it was due to my cache having old cookies, but nothing worked. A hard refresh did fix this upon a compete reinstall. Though since the 2020 site needed to be launched immediately we put it on a new VM. The old VM now is a staging environment for experimental features. The docker submission works but still just prints a csv. I made a better docker (bbearce/make_file_docker:csv) you can find on dockerhub, that is loaded with different submissions for testing that you can call with CMD arguments to a "docker run" command.

Comments

Things that went well:Things that could be improved:

Got the competition running
Learned how to implement https security through "certbot" certificates. Remember to put the certs created in the /codalab-competitions/certs/ folder and link to them in the .env file.
Got docker submissions implemented on the MICCAI 2020 VM. This is important because it proves I can migrate this functionality to other systems. Notes here.

Things that didn't go well or needs attention:

The initial MICCAI 2020 VM was the old MICCAI 2019 VM and upon implementing https I couldn't log in. I think it was due to my cache having old cookies, but nothing worked. A hard refresh did fix this upon a compete reinstall. Though since the 2020 site needed to be launched immediately we put it on a new VM. The old VM now is a staging environment for experimental features.
The docker submission works but still just prints a csv. I made a better docker (bbearce/make_file_docker:csv) you can find on dockerhub, that is loaded with different submissions for testing that you can call with CMD arguments to a "docker run" command.

Meeting	Date
Bi-weekly Meeting #1	07 Feb 13 Mar 2020
Bi-weekly Meeting #2	21 Feb 19 Mar 2020

Milestones

Description	Date
Docker submissions	15 Mar 2020
Setup docker submission	13 Mar 2020

Task

Description	Resolution	Status	Creation Date	Close Date
Get a docker image with a deep learning algorithm embedded inside so that we can test actual resource requirements. This will require a GPU machine.	Started	In Progress	19 Mar 2020	--

Risks

Description	Mitigation	Rank	Status	Creation Date	Realization	Close Date	The worker queue system in theory can handle multiple submissions by participants. Should that assumption not hold we could be in for a nasty surprise that this doesn't work as expected.	Test real AI containers that can take up to half a day to run on the system and submit multiple containers.	1	In Progress	1/13/2020
						--