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In a project as highly collaborative as caArray, frequent and open communication among all stakeholders is critical to success. In order to communicate with the broadest group possible about the status and direction of caArray project, we have decided to move the content of our monthly caArray User meetings to the caBIG® Integrative Cancer Research (ICR) Workspace meetings. These meetings are currently held twice a month,
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2:00-4:00pm
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ET,
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on
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the
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second
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and
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fourth
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Wednesdays
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of
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the
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month.
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A
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caArray
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update
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will
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be
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on
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the
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agenda
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about
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every
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other
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month.
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We
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hope
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the
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community
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will
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use
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these
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opportunities
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to
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learn
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about
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upcoming
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releases
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of
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caArray,
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to
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learn
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new
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features
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implemented
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in
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caArray,
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and
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to
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provide
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feedback
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on
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experiences.
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The
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agenda
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for
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the
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meetings
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in
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which
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caArray
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will
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be
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discussed
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will
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be
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sent
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to
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the
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caArray
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Users
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listserv
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and
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posted
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to
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the
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caArray
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Users
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forum
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a
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few
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days
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prior
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to
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the
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meetings.
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In
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addition,
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you
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are
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welcome
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to
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join
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the
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.
The ICR Workspace Meeting information is the following:
800-593-0616,
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passcode
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2927756
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Adobe
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connect
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session:
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http://cbiit.acrobat.com/icrws
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On
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this
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page
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we
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will
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post
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the
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slides
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for
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each
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caArray
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user
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meeting.
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Please
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use
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the
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...
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if
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you
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have
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any
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question
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or
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comment.
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- Agenda
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- for
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- October
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- 12,
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- 2011
- Sherri Decoronado (no
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- slides)
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- spoke
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- about
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- the
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- NCI
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- Provocative
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- Questions.
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- This
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- is
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- a
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- list
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- of
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- important
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- but
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- non-obvious
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- questions
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- that
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- will
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- stimulate
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- the
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- NCI’s
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- research
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- communities
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- to
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- use
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- laboratory,
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- clinical,
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- and
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- population
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- sciences
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- in
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- especially
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- effective
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- and
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- imaginative
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- ways.
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- Zhong Li highlighted the new Molecular Analysis Tools Knowledge Center wiki which provides centralized, authoritative repository of knowledge, information, and web-based support to facilitate the deployment and ongoing development of caBIG® tools, standards, and infrastructure in the molecular analysis domain. Tools supported are caArray, caIntegrator, GenePattern and geWorkbench.
- Rashmi Srinivasa provided an update on caArray, the array data management system.
- Michael Reich (slides on request efreund@3rdmill.com) presented GenomeSpace, a community space for creating and sharing genomic analysis tools (It is seeded with with six popular genomics tools (Cytoscape, Galaxy, GenePattern, Genomica, Integrative Genomics Viewer (IGV), and the UCSC Browser).
- Agenda for May 11, 2011
- 2:00 General Info
- 2:10 - caArray Users Meeting – Rashmi Srinivasa
- 2:40 – Jackson Laboratory Implementation Update – Grace Stafford
- 3:00 – Demonstration of Using caBIG® Workflows in Galaxy – Ravi Madduri
- 3:30 Meeting close
- Agenda for February 9, 2011
- 2:00 General Info
- Agenda review
- Action items
- Announcements
- Presentations –
- 2:10 – caArray Users Meeting – Rashmi Srinivasa and Dan Kokotov
- 3:00 - Meeting close
- 2:00 General Info
- Agenda for October 13, 2010
- 2:00 General Info
- Agenda review
- Action items
- Announcements
- Presentations –
- 2:10 – caArray Users Meeting and Annotare – Rashni Srinivasa
- 3:00 – Raghu Chintalapati
- 3:45 - Meeting close
- 2:00 General Info
- Agenda for August 11, 2010
- 2:00 Opening announcements
- Presentations –
- 2:05 – Using NCIt and NCImt – Liz Hahn-Dantona
- 2:30 – Making 508 Compliant Presentations
- 3:00 – caArray Users Meeting
- Overview of caArray
- caArray 2.4.0 - upcoming release
- caArray 2.5.0 - next major release
- Avenues for feedback
- 4:00 - Meeting close
- Slides for June 2, 2010
- caArray 2.4.0 - release plan and feature list
- geWorkbench 2.0 demo
- MATKC Update
- Slides for March 3, 2010
- caArray 2.3.1 - demo of GEO export
- caArray 2.4.0 - release plan and scope
- MATKC Update
- Slides for February 3, 2010
- Update on caArray 2.3.1
- MATKC Update
- caInt2 Demo
- Slides for December 2, 2009
- Update on caArray 2.3.1
- Demo on GEO export
- MATKC Update
- Slides for November 4, 2009 and Slides for UAMS for November 4, 2009
- Update on caArray 2.3.0
- caArray customization update
- caArray-geWorkbench integration update
- MATKC Update
- Slides for September 2, 2009
- caArray 2.3.0 release update
- caInt2-caArray demo
- MATKC Update
- Slides for August 5, 2009
- caArray 2.3.0 update
- annotare demo
- MATKC Update
- Slides for June 3, 2009
- Slides for May 6, 2009
- MATKC:Slides for April 1, 2009
- Slides for Jan 7, 2009
- Slides for Nov 5, 2008
- Slides for Oct 1, 2008
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