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This chapter includes the following topics.
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Organization of this Guide
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- Using the caIntegrator User's Guide--This chapter introduces you to the caIntegrator 1.3 User's Guide and suggests ways you can maximize its use.
- 1 - Getting Started with caIntegrator--This chapter provides details about launching caIntegrator, navigating the interface, accessing online help and performing basic tasks.
- 2 - Creating a New Study--This chapter describes the processes for creating and managing clinical and genomic studies and adding imaging data to studies in caIntegrator.
- 3 4 - Searching a caIntegrator Study--This chapter describes the procedures for searching studies within caIntegrator using the search and browse tools.
- 4 5 - Viewing Query Results--This chapter describes search results that caIntegrator returns from study queries.
- 5 6 - Analyzing Studies--This chapter describes how to use caIntegrator tools to analyze data in clinical or genomic studies that have been deployed in caIntegrator.
- 6 7 - Administering User Accounts--This chapter describes the processes for creating and managing user accounts in caIntegrator.
- A - Data Import Configurations--This appendix describes how MAGE-TAB documents are parsed, validated and imported into caIntegrator. It also provides examples of the types of MAGE-TAB documents that are compatible with caIntegrator.
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Convention | Description | Example |
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Bold & Capitalized Command | Indicates a Menu command | Admin > Refresh |
| Used for file names, directory names, commands, code snippets, file listings, and anything that would appear in a Java program, such as methods, variables, and classes. |
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Icon | A toolbar button that you click | Click the Refresh button ( |
Boldface type | Options that you select in dialog boxes or drop-down menus. Buttons or icons that you click. | In the Open dialog box, select the file and click the Open button. |
Italics | Used to reference other documents, sections, figures, and tables. | caArray 2.4 Technical Guide |
| Text that you type | In the New Subset text box, enter |
Note: | Highlights a concept of particular interest | Note: This concept is used throughout the installation manual. |
Warning! | Highlights information of which you should be particularly aware. | Warning! Deleting an object will permanently delete it from the database. |
{ } | Curly brackets are used for replaceable items. | Replace {root directory} with its proper value, such as |
Credits and Resources
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Application Support
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