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1) Integrated Azure's Kubernetes \ Storage \ Networks \ VM pools \ and Docker Registry pieces with CodaLab with the help from Patrick Flickinger. 

2) Integrated Okta into CodaLab for the same project. Okat is a single sign on, federate identity based authentication system. .to be filled outThis means we can use Partners IDs for signing in.

Planned for next month

1) In September I need to make the VM resource pool contain GPUs.

2) Test Phase ends  9/3 and participant finalists will need their Dockers run on the CBIT platform as well as at MGH..to be filled out

3) Upload Carolyn's video to Medici website.

Comments

Things that went well:

  • Integration with Azure infrastructure:
  • Image Added
  • Image Added
  • Integration with Okta:
  • Image Added
  • Miccai Test Phase is finishing up and we have 10 total submissions:
  • Image Added
  • With an active forum:
...to be filled out
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Comments

Things that could be improved:

  • Azure integration is pretty basic still. We need to test a real algorithm on real GPUs.
  • Image Added
  • What we want to see above is more columns for characterizing the performance of the algorithm: ['AUC','Sensitivity','Specificity','Positive Predictive Value (PPV)']. to be filled outWe want to allow participants to train and get an output of their model so far. 



MeetingDate
Bi-weekly Meeting #1

 

Bi-weekly Meeting #2

 

Milestones

DescriptionDate
  • Azure integration
  • Okta Integration
  • Miccai Test Phase is completed in a day (9/4)
...to be filled out


Task

DescriptionResolutionStatusCreation DateClose Date

Get sample pneumonia algorithm running on Azure VM

Need to increase quotapending

 

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Get pools of VMs in Azure integration to be based on GPU machines


Depends on above taskpending

 

...to be filled out

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Risks

DescriptionMitigationRankStatusCreation DateRealizationClose Date
If we can't get GPU machines hooked up to Kebernetes in Azure then we can't run algorithmsExecute above tasks and get help from Patrick and or Azure support team1pending

 

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