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Regrets

  • William Hendriks (OOO)
  • Warren Kibbe (OOO)
  • Matthew Breen


Goals

  • Review, discuss and prioritize ICDC study submission proposals

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ItemWhoNotes
Candidate Publications/Data for ICDC

Kuffel, Gina (NIH/NCI) [C]

  • Selected list of papers relevant to ICDC's mission from Erika Berger & Amy LeBlanc
New Data Submission Kuffel, Gina (NIH/NCI) [C]
  • 15 TB Pancreatic Cancer 
  • Still needs further discussion since this is a re-analysis of publicly available data
  • Breed prediction validation pipeline in GitHub can be found here.
Study Updates

 Musk, Philip (NIH/NCI) [C]

  • Glioma- Met with Samir, vcf files, creds have been provided (case-level vcf files and MAF files)
  • OSA01- waiting on submitter, creds have been provided
  • MGT01- done from onboarding perspective, ready for QA on the FNL side, pending record will show in upcoming prod release
  • COTC022- fully onboarded to dev, ready for full QA on the FNL side
  • Possible publication from the Duval group
  • No movement on UBC studies, had kickoff call for UBC03
  • UBC01- embargo to be lifted as soon as manuscript is released on Molec Cancer Ther website
  • UBC02- embargo has been removed
  • COTC022- from Amy LeBlanc's group. This study is now onboarded. Study and dog records have been created.
  • MGT01- fully onboarded to dev environment
Feature Updates

Kuffel, Gina (NIH/NCI) [C]

  • Production release scheduled for 9-1315-21
  • Official release notes will be available soon
Material Transfer Agreement (MTA)Kuffel, Gina (NIH/NCI) [C]
  • Intended to serve as a mechanism for reimbursement for the cost of preparing and submitting data
RNA-Seq broad normalization
  • Carry over to next meeting. Need full team for productive discussion.

Minutes (Not Verbatim)

GT- Manuscript has be accepted

PM- Was accession_id included in the manuscript submission?

GT- No, only a link to ICDC at this point.

PM- Not sure of next steps for candidate publications, the larger group should discuss and prioritize.

EK- Table the new data submission discussion for now until we have Warren on the call.

PM- Additional studies are coming from glioma study

GT- Putting together the proteomic manuscript, as soon as it's out the door I will get the data ready for submission.

PM- Blood samples are already created so we could attach the files to that node

GT- The data is a master matrix file. Each entry is a protein abundance value. We could break the file down by sample if that is best. Should be coming in the next month or two.

EK- Is it mass-spec data? Asking in context of the PDC (part of the CRDC)

GT- It is mass-spec data. 

Action items