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h1. NCI Protégé
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* Version Number and Release Date:
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Tool Overview
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NCI Protégé is a collection of Protégé plug-ins developed for the NCI-specific editing environment. Protégé is an open-source development environment for ontologies and knowledge based systems. The OWL plug-in extends the environment to support the Web Ontology Language (OWL). Refer to the Protégé page for more information. NCI Protégé is a collection of Protégé plug-ins used to edit the NCI Thesaurus. NCI Protégé provides a customized OWL editing environment, including additional editing and querying capabilities that are not available in the Protégé OWL plug-in. The NCI-specific plug-ins have been implemented as a tabbed interface. Beginning with NCI Protégé 1.3.0. this tool allows imports of ontologies in database mode and enables collaborators to begin "federating" ontologies. |
Installation and Downloads
The distribution package can be found on the GForge files archive page.
The package contains the following (this may vary slightly for different versions):
- The installation folders for the client, Explanation server and Protégé server.
- A metaproject which contains accounts for editor and administrator by default.
- Test BiomedGT and NCIThesaurus OWL files to load.
- An import-repository folder containing OWL files to set up a local ontology repository.
- A ReadMe file with instructions on how to configure all the necessary scripts from scratch.
When you install a new release, you must configure a new database project, following the instructions on Protege Software Updates and Configuring New Database Project. These instructions reflect the NCI EVS server environment (directory structures, filenames, server hostnames, etc). It is not required, but it is probably easiest, to set up the same directories in a new environment.
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If you are an NCI editor, you will only need to download the appropriate client, from the list on the GForge archive downloads page. |
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NCI Protégé Forum and Support
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...
What's
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New
...
The
...
final
...
version
...
of
...
NCI
...
Protégé
...
(1.4.3)
...
to
...
be
...
built
...
on
...
the
...
Protégé
...
3.4
...
code
...
base
...
from
...
Stanford
...
has
...
been
...
released.
...
The
...
status
...
of
...
NCI
...
Protégé
...
is
...
now
...
maintenance
...
mode.
...
Only
...
major
...
bugs
...
that
...
appear
...
in
...
production
...
will
...
be
...
fixed.
...
Future
...
versions
...
of
...
NCI
...
Protégé
...
are
...
being
...
considered
...
for
...
the
...
Protege
...
4
...
code
...
base.
...
Features
The EVS Protégé distribution includes the NCIEditTab Protégé plug-in
...
editing
...
client
...
(and
...
other
...
plug-ins),
...
a
...
highly
...
concurrent
...
Protégé
...
server
...
(modified
...
from
...
the
...
base
...
Stanford
...
distribution),
...
and
...
an
...
Explanation
...
server
...
that
...
includes
...
the
...
Pellet
...
reasoner.
...
Client
...
Environment
...
The
...
client
...
environment
...
includes:
...
- NCIEditTab
...
- plug-in,
...
- supporting
...
- basic
...
- editing
...
- functionality
...
- as
...
- well
...
- as
...
- complex
...
- edits
...
- (merge,
...
- split,
...
- retirement,
...
- and
...
- cloning),
...
- batch
...
- jobs,
...
- report
...
- writing,
...
- and
...
- tree-like
...
- views
...
- of
...
- graphs
...
- built
...
- along
...
- transitive
...
- relationships
...
- (e.g.
...
- part_of).
...
- It
...
- supports
...
- XMLLiterals
...
- for
...
- complex
...
- properties
...
- as
...
- per
...
- configuration,
...
- and
...
- tracks
...
- editing
...
- history
...
- independently
...
- of
...
- the
...
- change
...
- ontology,
...
- which
...
- is
...
- used
...
- in
...
- support
...
- of
...
- Prompt.
...
- LuceneQuery
...
- tab
...
- plug-in,
...
- supporting
...
- a
...
- variety
...
- of
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- search
...
- modes
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- (including
...
- negation)
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- on
...
- annotations
...
- and
...
- restrictions
...
- as
...
- well
...
- as
...
- indexed
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- Lucene
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- "match"
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- and
...
- "sounds
...
- like"
...
- searching,
...
- plus
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- reporting
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- support
...
- for
...
- the
...
- result
...
- sets.
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- Explanation
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- tab
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- plug-in,
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- providing
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- a
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- description
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- logic
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- entailment-explanation
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- facility
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- integrated
...
- with
...
- an
...
- incremental
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- classifier;
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- classification
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- results
...
- are
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- available
...
- to
...
- all
...
- the
...
- clients
...
- in
...
- the
...
- client-server
...
- environment.
...
- Workflow
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- tab
...
- plug-in,
...
- supporting
...
- basic
...
- workflow/assignment
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- functionality,
...
- and
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- communications
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- to
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- Semantic
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- Media
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- Wiki
...
- if
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- set
...
- up
...
- for
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- collaborative
...
- development.
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Roadmap
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NCI
...
Protégé
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Presentations
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The information and links in this section are no longer being updated and are provided for reference purposes only. |
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NCI
...
Protégé
...
Documentation
...
and
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Training
Note |
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The information and links in this section are no longer being updated and are provided for reference purposes only. |
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