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The caIntegrator 1.3
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User's
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Guide
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is
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the
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companion
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documentation
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to
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the
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caIntegrator
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software
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application.
...
The
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user's
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guide
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includes
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information
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and
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instructions
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for
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using
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caIntegrator.
...
This
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chapter
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includes
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the
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following
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topics.
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Table of Contents |
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Organization of this Guide
The caIntegrator 1.3
...
User's
...
Guide
...
]
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contains
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the
...
following
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chapters
...
and
...
appendices:
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- Using
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- the
...
- caIntegrator
...
- User's
...
- Guide
...
- --This
...
- chapter
...
- introduces
...
- you
...
- to
...
- the
...
- caIntegrator
...
- 1.3
...
- User's
...
- Guide
...
- and
...
- suggests
...
- ways
...
- you
...
- can
...
- maximize
...
- its
...
- use.
...
...
...
...
...
...
...
- --This
...
- chapter
...
- provides
...
- details
...
- about
...
- launching
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- caIntegrator,
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- navigating
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- the
...
- interface,
...
- accessing
...
- online
...
- help
...
- and
...
- performing
...
- basic
...
- tasks.
...
...
...
...
...
...
...
- --This
...
- chapter
...
- describes
...
- the
...
- processes
...
- for
...
- creating
...
- and
...
- managing
...
- clinical
...
- and
...
- genomic
...
- studies
...
- and
...
- adding
...
- imaging
...
- data
...
- to
...
- studies
...
- in
...
- caIntegrator.
...
...
...
...
...
...
...
- --This
...
- chapter
...
- describes
...
- the
...
- procedures
...
- for
...
- searching
...
- studies
...
- within
...
- caIntegrator
...
- using
...
- the
...
- search
...
- and
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- browse
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- tools.
...
...
...
...
...
...
- --This
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- chapter
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- describes
...
- search
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- results
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- that
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- caIntegrator
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- returns
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- from
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- study
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- queries.
...
...
...
...
...
- --This
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- chapter
...
- describes
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- how
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- to
...
- use
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- caIntegrator
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- tools
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- to
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- analyze
...
- data
...
- in
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- clinical
...
- or
...
- genomic
...
- studies
...
- that
...
- have
...
- been
...
- deployed
...
- in
...
- caIntegrator.
...
...
...
...
...
...
- --This
...
- chapter
...
- describes
...
- the
...
- processes
...
- for
...
- creating
...
- and
...
- managing
...
- user
...
- accounts
...
- in
...
- caIntegrator.
...
...
...
...
...
...
- --This
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- appendix
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- describes
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- how
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- MAGE-TAB
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- documents
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- are
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- parsed,
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- validated
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- and
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- imported
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- into
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- caIntegrator.
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- It
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- also
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- provides
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- examples
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- of
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- the
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- types
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- of
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- MAGE-TAB
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- documents
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- that
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- are
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- compatible
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- with
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- caIntegrator.
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User's
...
Guide
...
Text
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Conventions
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The
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following
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table
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illustrates
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how
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text
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conventions
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are
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represented
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in
...
this
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guide.
...
The
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various
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typefaces
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differentiate
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between
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regular
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text
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and
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menu
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commands,
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keyboard
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keys,
...
toolbar
...
buttons,
...
dialog
...
box
...
options
...
and
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text
...
that
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you
...
type.
...
Convention | Description | Example |
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Bold & Capitalized Command | Indicates a Menu command | Admin > Refresh |
| Used for file names, directory names, commands, code snippets, file listings, and anything that would appear in a Java program, such as methods, variables, and classes. |
|
Icon | A toolbar button that you click | Click the Refresh button () to update the screen. |
Boldface type | Options that you select in dialog boxes or drop-down menus. Buttons or icons that you click. | In the Open dialog box, select the file and click the Open button. |
Italics | Used to reference other documents, sections, figures, and tables. | caArray 2.4 Technical Guide |
| Text that you type | In the New Subset text box, enter |
Note: | Highlights a concept of particular interest | Note: This concept is used throughout the installation manual. |
Warning! | Highlights information of which you should be particularly aware. | Warning! Deleting an object will permanently delete it from the database. |
{ } | Curly brackets are used for replaceable items. | Replace {root directory} with its proper value, such as |
Credits and Resources
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Application Support
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